Variant report

Variant	rs17111165
Chromosome Location	chr14:81309536-81309537
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10129919	0.82[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10132871	0.91[JPT][hapmap]
rs10498551	0.80[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs10498552	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11159475	0.80[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.96[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11159476	0.96[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12147014	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12147744	0.82[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes]
rs12586162	0.82[CEU][hapmap];0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12586908	0.82[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes]
rs12587068	0.85[AMR][1000 genomes]
rs12587210	0.86[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12587246	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12587367	0.82[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.96[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12587373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12587844	0.82[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12587883	0.91[JPT][hapmap]
rs12588075	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12588311	0.87[CHB][hapmap];1.00[YRI][hapmap]
rs12588374	0.87[CHB][hapmap]
rs12588758	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12589266	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12589927	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12589935	0.80[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.96[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12590477	0.88[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs12590579	0.80[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs12590682	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap]
rs12590770	0.85[AMR][1000 genomes]
rs12878621	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12880008	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12882027	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12884630	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12885049	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12885089	0.96[CHB][hapmap]
rs12885819	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12892149	0.82[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.96[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12892368	0.89[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12896053	0.90[CHB][hapmap]
rs12897928	0.94[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1458992	0.80[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.96[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1470639	0.95[CHB][hapmap]
rs17094159	0.96[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17111034	0.91[CHB][hapmap];1.00[YRI][hapmap]
rs17111035	0.91[CHB][hapmap];1.00[YRI][hapmap]
rs17111078	0.90[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs17111143	0.80[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17111144	0.96[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17111149	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17111151	0.82[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17111167	0.82[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.96[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2021815	0.82[CEU][hapmap];0.96[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2077532	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2195101	0.91[JPT][hapmap]
rs2371414	0.90[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2371417	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2371461	0.82[JPT][hapmap]
rs2840052	0.90[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs2888031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs327433	0.86[JPT][hapmap]
rs34144142	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34232168	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34264363	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34296139	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34465155	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34563443	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34611247	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34868228	0.85[AMR][1000 genomes]
rs35380298	0.96[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35728625	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35765671	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3742720	0.91[JPT][hapmap]
rs3861639	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55634365	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55859624	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs60407794	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66586819	0.88[AMR][1000 genomes]
rs66748940	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71416850	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7149702	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv832840	chr14:81270033-81423583	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81285000-81310200	Weak transcription	A549	lung
2	chr14:81285000-81311200	Weak transcription	Ovary	ovary
3	chr14:81285200-81315600	Weak transcription	HSMM	muscle
4	chr14:81290600-81311200	Weak transcription	Fetal Stomach	stomach
5	chr14:81291600-81310000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr14:81291600-81310800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr14:81291600-81331000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr14:81291800-81344200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:81292200-81328200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr14:81304800-81314400	Weak transcription	Thymus	Thymus
11	chr14:81305200-81321600	Weak transcription	Fetal Thymus	thymus
12	chr14:81306600-81311200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr14:81307000-81310800	Weak transcription	Dnd41	blood
14	chr14:81309000-81309800	Enhancers	Brain Cingulate Gyrus	brain
15	chr14:81309000-81310000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr14:81309400-81309800	Enhancers	Brain Substantia Nigra	brain

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