Variant report

Variant	rs2021815
Chromosome Location	chr14:81313638-81313639
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10129919	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10498551	1.00[CEU][hapmap]
rs10498552	0.82[CEU][hapmap]
rs11159475	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11159476	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12147014	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12147744	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12586162	1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12586298	1.00[YRI][hapmap]
rs12586908	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12587068	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12587210	0.85[AMR][1000 genomes]
rs12587246	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12587367	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12587373	0.96[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12587844	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12588075	0.80[CEU][hapmap];0.96[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12588758	0.85[AMR][1000 genomes]
rs12588767	1.00[YRI][hapmap]
rs12589266	0.85[AMR][1000 genomes]
rs12589927	0.96[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12589935	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12590579	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12590682	0.80[CEU][hapmap]
rs12590770	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12878621	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12880008	0.82[CEU][hapmap];0.96[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12882027	0.82[CEU][hapmap]
rs12884630	0.81[CEU][hapmap];0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12885049	0.82[CEU][hapmap];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12885819	0.80[CEU][hapmap];0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12892149	1.00[CEU][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12897928	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1458992	1.00[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17094159	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17111143	1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17111144	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17111149	0.96[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17111151	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17111165	0.82[CEU][hapmap];0.96[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17111167	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2077532	0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2371417	0.80[CEU][hapmap];0.85[AMR][1000 genomes]
rs2888031	0.96[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs34144142	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs34232168	0.96[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34264363	0.96[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs34296139	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs34465155	0.96[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs34563443	0.85[AMR][1000 genomes]
rs34611247	0.85[AMR][1000 genomes]
rs34868228	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35380298	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35728625	0.85[AMR][1000 genomes]
rs35765671	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs3861639	0.82[CEU][hapmap];0.96[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs55634365	0.85[AMR][1000 genomes]
rs55859624	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60407794	0.85[AMR][1000 genomes]
rs66586819	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66748940	0.96[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs71416850	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv832840	chr14:81270033-81423583	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81285200-81315600	Weak transcription	HSMM	muscle
2	chr14:81291600-81331000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr14:81291800-81344200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr14:81292200-81328200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr14:81304800-81314400	Weak transcription	Thymus	Thymus
6	chr14:81305200-81321600	Weak transcription	Fetal Thymus	thymus
7	chr14:81310000-81315600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr14:81310600-81315600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr14:81311400-81316000	Weak transcription	HSMMtube	muscle
10	chr14:81311400-81322800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr14:81311600-81314400	Weak transcription	A549	lung
12	chr14:81312400-81315600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr14:81313600-81314800	Strong transcription	Dnd41	blood

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