Variant report

Variant	rs12586162
Chromosome Location	chr14:81291054-81291055
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10129919	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10498551	1.00[CEU][hapmap]
rs10498552	0.82[CEU][hapmap]
rs11159475	1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11159476	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12147014	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12147744	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12586908	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12587068	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12587210	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12587246	0.87[AMR][1000 genomes]
rs12587367	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12587373	0.94[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12587844	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12588075	0.80[CEU][hapmap];0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12588758	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12589266	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12589927	0.94[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12589935	1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12590579	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12590682	0.80[CEU][hapmap]
rs12590770	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12878621	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12880008	0.82[CEU][hapmap];0.94[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12882027	0.82[CEU][hapmap]
rs12884630	0.82[CEU][hapmap];0.87[AMR][1000 genomes]
rs12885049	0.82[CEU][hapmap];0.83[AMR][1000 genomes]
rs12885819	0.80[CEU][hapmap];0.83[AMR][1000 genomes]
rs12892149	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12897928	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1458992	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17094159	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17111143	1.00[CEU][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17111144	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17111149	0.94[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17111151	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17111165	0.82[CEU][hapmap];0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17111167	1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2021815	1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2077532	0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2371417	0.80[CEU][hapmap];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2888031	0.94[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs327433	0.81[ASN][1000 genomes]
rs34144142	0.87[AMR][1000 genomes]
rs34232168	0.94[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs34264363	0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs34296139	0.87[AMR][1000 genomes]
rs34465155	0.94[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs34563443	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs34611247	0.83[AMR][1000 genomes]
rs34868228	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35380298	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35728625	0.83[AMR][1000 genomes]
rs35765671	0.83[AMR][1000 genomes]
rs3861639	0.82[CEU][hapmap];0.94[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs55634365	0.83[AMR][1000 genomes]
rs55859624	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60407794	0.83[AMR][1000 genomes]
rs66586819	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66748940	0.94[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs71416850	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv832840	chr14:81270033-81423583	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
3	nsv976358	chr14:81287297-81292051	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81192800-81305400	Weak transcription	Primary B cells from cord blood	blood
2	chr14:81281600-81304200	Weak transcription	Primary T cells from cord blood	blood
3	chr14:81284400-81291800	Strong transcription	Fetal Thymus	thymus
4	chr14:81284600-81291200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr14:81285000-81291200	Weak transcription	Fetal Brain Female	brain
6	chr14:81285000-81304600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr14:81285000-81310200	Weak transcription	A549	lung
8	chr14:81285000-81311200	Weak transcription	Ovary	ovary
9	chr14:81285200-81315600	Weak transcription	HSMM	muscle
10	chr14:81286200-81305800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr14:81286400-81292200	Weak transcription	Brain Hippocampus Middle	brain
12	chr14:81287000-81291400	Strong transcription	Dnd41	blood
13	chr14:81288000-81291800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr14:81288000-81307800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr14:81288200-81294400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr14:81288800-81305800	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr14:81289600-81292000	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr14:81290000-81291400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
19	chr14:81290000-81291600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr14:81290000-81291600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
21	chr14:81290000-81291800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr14:81290000-81291800	ZNF genes & repeats	Thymus	Thymus
23	chr14:81290200-81291800	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
24	chr14:81290200-81292200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr14:81290400-81291200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr14:81290400-81291600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
27	chr14:81290400-81291600	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
28	chr14:81290400-81291600	ZNF genes & repeats	Left Ventricle	heart
29	chr14:81290600-81311200	Weak transcription	Fetal Stomach	stomach
30	chr14:81290800-81291400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr14:81290800-81291600	ZNF genes & repeats	Stomach Smooth Muscle	stomach
32	chr14:81290800-81291800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr14:81291000-81291400	ZNF genes & repeats	Fetal Heart	heart

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