Variant report

Variant	rs34563443
Chromosome Location	chr14:81281671-81281672
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11159475	0.85[AMR][1000 genomes]
rs11159476	0.85[AMR][1000 genomes]
rs12147014	0.85[AMR][1000 genomes]
rs12147744	0.81[AMR][1000 genomes]
rs12586162	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12586908	0.81[AMR][1000 genomes]
rs12587068	0.81[AMR][1000 genomes]
rs12587210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12587246	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12587367	0.85[AMR][1000 genomes]
rs12587373	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12587844	0.85[AMR][1000 genomes]
rs12588075	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12588758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12589266	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12589927	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12589935	0.85[AMR][1000 genomes]
rs12590579	0.81[ASN][1000 genomes]
rs12590770	0.81[AMR][1000 genomes]
rs12878621	0.85[AMR][1000 genomes]
rs12880008	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12884630	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12885049	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12885819	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12892149	0.85[AMR][1000 genomes]
rs12897928	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1458992	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17094159	0.85[AMR][1000 genomes]
rs17111143	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17111144	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17111149	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17111151	0.81[ASN][1000 genomes]
rs17111165	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17111167	0.85[AMR][1000 genomes]
rs2021815	0.85[AMR][1000 genomes]
rs2077532	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2371417	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2888031	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs327433	0.81[ASN][1000 genomes]
rs34144142	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34232168	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34264363	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34296139	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34465155	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34611247	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34868228	0.81[AMR][1000 genomes]
rs35380298	0.85[AMR][1000 genomes]
rs35728625	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35765671	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3861639	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55634365	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs55859624	0.83[AMR][1000 genomes]
rs60407794	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs66586819	0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs66748940	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71416850	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv832840	chr14:81270033-81423583	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81192800-81305400	Weak transcription	Primary B cells from cord blood	blood
2	chr14:81251800-81282600	Weak transcription	A549	lung
3	chr14:81265600-81284400	Weak transcription	Fetal Thymus	thymus
4	chr14:81267400-81284200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:81267400-81284800	Weak transcription	HSMM	muscle
6	chr14:81269600-81284400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr14:81272200-81284600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr14:81273400-81284400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr14:81275000-81282600	Weak transcription	Aorta	Aorta
10	chr14:81275200-81282800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr14:81275200-81283400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr14:81275200-81284000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr14:81275200-81284400	Weak transcription	Thymus	Thymus
14	chr14:81277600-81284600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr14:81279000-81284000	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr14:81279200-81284400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr14:81280000-81284200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr14:81280200-81284600	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr14:81281000-81284200	Strong transcription	Dnd41	blood
20	chr14:81281200-81284400	Weak transcription	Ovary	ovary
21	chr14:81281600-81304200	Weak transcription	Primary T cells from cord blood	blood

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