Variant report

Variant	rs12586298
Chromosome Location	chr14:81328793-81328794
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10498550	1.00[JPT][hapmap]
rs11159475	1.00[YRI][hapmap]
rs12586860	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12586869	1.00[JPT][hapmap]
rs12587252	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12587844	1.00[YRI][hapmap]
rs12588700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12588767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12589529	1.00[CHB][hapmap]
rs12589935	1.00[YRI][hapmap]
rs12892149	0.83[YRI][hapmap]
rs17111040	1.00[JPT][hapmap]
rs17111069	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17111140	0.95[EUR][1000 genomes]
rs17111154	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17111167	1.00[YRI][hapmap]
rs2021815	1.00[YRI][hapmap]
rs2371415	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs35654991	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55956216	0.94[ASN][1000 genomes]
rs58900495	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59549907	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7144235	0.81[ASN][1000 genomes]
rs7144462	0.87[ASN][1000 genomes]
rs73338175	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73338184	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73338192	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs73338195	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73340185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73340194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73342103	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73342108	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73342113	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73344053	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73344084	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73344651	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73344656	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73344662	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73344664	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv832840	chr14:81270033-81423583	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81291600-81331000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr14:81291800-81344200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr14:81316600-81338800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr14:81317800-81333400	Weak transcription	Psoas Muscle	Psoas
5	chr14:81317800-81334400	Weak transcription	A549	lung
6	chr14:81318000-81332800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr14:81320000-81331800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr14:81321600-81382200	Weak transcription	Left Ventricle	heart
9	chr14:81323600-81330000	Weak transcription	Hela-S3	cervix
10	chr14:81323800-81333400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr14:81326200-81333200	Weak transcription	NHEK	skin
12	chr14:81326200-81336400	Weak transcription	NHDF-Ad	bronchial
13	chr14:81326400-81329600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr14:81326600-81329400	Strong transcription	Dnd41	blood
15	chr14:81326600-81339800	Weak transcription	Fetal Thymus	thymus
16	chr14:81327000-81333800	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr14:81327800-81333400	Weak transcription	Primary hematopoietic stem cells	blood
18	chr14:81328200-81328800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr14:81328400-81329200	Strong transcription	Thymus	Thymus
20	chr14:81328400-81329200	Strong transcription	HSMM	muscle

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