Variant report

Variant	rs35654991
Chromosome Location	chr14:81289467-81289468
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10129919	0.85[AFR][1000 genomes]
rs10130908	0.81[AMR][1000 genomes]
rs10134286	0.81[AMR][1000 genomes]
rs10137290	0.81[AMR][1000 genomes]
rs10137669	0.81[AMR][1000 genomes]
rs10139626	0.81[AMR][1000 genomes]
rs10146123	0.82[AFR][1000 genomes]
rs11845100	0.81[AMR][1000 genomes]
rs11849362	0.81[AMR][1000 genomes]
rs12586298	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12586860	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12587252	0.82[AMR][1000 genomes]
rs12588700	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12588767	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12589097	0.80[ASN][1000 genomes]
rs12590579	0.84[AFR][1000 genomes]
rs17111069	0.80[ASN][1000 genomes]
rs17111113	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17111140	1.00[EUR][1000 genomes]
rs17111151	0.88[AFR][1000 genomes]
rs17111154	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2371415	0.80[ASN][1000 genomes]
rs28445165	0.81[AMR][1000 genomes]
rs28638187	0.81[AMR][1000 genomes]
rs55806640	0.81[AMR][1000 genomes]
rs55908787	0.81[AMR][1000 genomes]
rs55956216	0.82[AMR][1000 genomes]
rs56835406	0.81[AMR][1000 genomes]
rs58900495	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59549907	0.90[EUR][1000 genomes]
rs7142436	0.81[AMR][1000 genomes]
rs7154345	0.81[AMR][1000 genomes]
rs7159966	0.81[AFR][1000 genomes]
rs73338175	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73338184	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73338192	0.87[ASN][1000 genomes]
rs73338195	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73340185	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73340194	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73342103	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73342108	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73342113	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73344053	1.00[EUR][1000 genomes]
rs73344643	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73344651	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73344656	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73344662	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73344664	0.95[EUR][1000 genomes]
rs74064586	0.81[AMR][1000 genomes]
rs74064589	0.81[AMR][1000 genomes]
rs74064591	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv832840	chr14:81270033-81423583	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
3	nsv976358	chr14:81287297-81292051	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81192800-81305400	Weak transcription	Primary B cells from cord blood	blood
2	chr14:81281600-81304200	Weak transcription	Primary T cells from cord blood	blood
3	chr14:81282800-81290000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:81284400-81291800	Strong transcription	Fetal Thymus	thymus
5	chr14:81284600-81291200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr14:81284800-81290000	Weak transcription	Fetal Stomach	stomach
7	chr14:81284800-81290200	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr14:81285000-81290000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr14:81285000-81290800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr14:81285000-81291200	Weak transcription	Fetal Brain Female	brain
11	chr14:81285000-81304600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr14:81285000-81310200	Weak transcription	A549	lung
13	chr14:81285000-81311200	Weak transcription	Ovary	ovary
14	chr14:81285200-81290000	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr14:81285200-81315600	Weak transcription	HSMM	muscle
16	chr14:81285400-81290200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr14:81285600-81290000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr14:81285600-81290000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr14:81286200-81290000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr14:81286200-81290400	Weak transcription	Left Ventricle	heart
21	chr14:81286200-81305800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr14:81286400-81292200	Weak transcription	Brain Hippocampus Middle	brain
23	chr14:81286600-81290000	Weak transcription	Stomach Smooth Muscle	stomach
24	chr14:81287000-81290200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr14:81287000-81291400	Strong transcription	Dnd41	blood
26	chr14:81287200-81290400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr14:81287400-81290400	Weak transcription	Right Ventricle	heart
28	chr14:81288000-81290000	Strong transcription	Thymus	Thymus
29	chr14:81288000-81291000	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr14:81288000-81291800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr14:81288000-81307800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr14:81288200-81294400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr14:81288800-81305800	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr14:81289000-81290000	Weak transcription	Duodenum Smooth Muscle	Duodenum

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