Variant report

Variant	rs10134286
Chromosome Location	chr14:81310601-81310602
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10129361	0.87[AFR][1000 genomes]
rs10130315	0.96[YRI][hapmap]
rs10130613	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs10130687	0.83[AFR][1000 genomes]
rs10130858	0.87[AFR][1000 genomes]
rs10130908	0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10132917	0.92[YRI][hapmap]
rs10133039	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs10133081	0.96[YRI][hapmap]
rs10133213	0.92[YRI][hapmap]
rs10133246	0.89[AFR][1000 genomes]
rs10134049	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs10137290	0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10137669	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10139039	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs10139626	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10139628	1.00[YRI][hapmap]
rs10141192	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs10142758	0.96[YRI][hapmap];0.84[AFR][1000 genomes]
rs10143757	0.91[AFR][1000 genomes]
rs10144178	0.89[AFR][1000 genomes]
rs10144828	0.91[AFR][1000 genomes]
rs10145860	0.92[YRI][hapmap]
rs10146123	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs10148517	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs10149433	0.96[YRI][hapmap]
rs10150391	0.92[YRI][hapmap]
rs10151410	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs10438029	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs11844105	0.85[AFR][1000 genomes]
rs11844724	0.96[YRI][hapmap];0.86[AFR][1000 genomes]
rs11844869	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11845100	0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11845772	0.95[YRI][hapmap];0.83[AFR][1000 genomes]
rs11847064	0.84[AFR][1000 genomes]
rs11848413	0.91[AFR][1000 genomes]
rs11848607	0.89[YRI][hapmap]
rs11849246	0.90[YRI][hapmap];0.87[AFR][1000 genomes]
rs11849362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11850467	0.92[YRI][hapmap]
rs11851465	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs11851697	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs12323870	0.84[AFR][1000 genomes]
rs17111059	0.96[YRI][hapmap]
rs17111220	0.96[YRI][hapmap];0.83[AFR][1000 genomes]
rs17111229	0.88[YRI][hapmap]
rs1863767	0.95[YRI][hapmap];0.87[AFR][1000 genomes]
rs2060594	0.96[YRI][hapmap]
rs2060595	0.96[YRI][hapmap]
rs2195102	0.92[YRI][hapmap];0.82[AFR][1000 genomes]
rs28445165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28510159	0.87[AFR][1000 genomes]
rs28576038	0.88[AFR][1000 genomes]
rs28609268	0.87[AFR][1000 genomes]
rs28631251	0.87[AFR][1000 genomes]
rs28638187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28771783	0.87[AFR][1000 genomes]
rs28811052	0.87[AFR][1000 genomes]
rs28856091	0.87[AFR][1000 genomes]
rs34336276	0.89[AFR][1000 genomes]
rs34529456	0.84[AFR][1000 genomes]
rs34929621	0.83[AFR][1000 genomes]
rs35654991	0.81[AMR][1000 genomes]
rs55806640	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55908787	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56835406	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60459982	0.85[AFR][1000 genomes]
rs60831956	0.91[AFR][1000 genomes]
rs7140210	0.88[YRI][hapmap]
rs7142436	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7146496	0.92[YRI][hapmap];0.91[AFR][1000 genomes]
rs7152740	0.92[YRI][hapmap]
rs7152900	0.88[YRI][hapmap]
rs7153324	0.96[YRI][hapmap]
rs7154345	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7159966	0.87[AFR][1000 genomes]
rs74064586	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064587	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs74064589	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74066925	0.87[AFR][1000 genomes]
rs8010968	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs8015542	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs8019256	0.96[YRI][hapmap]
rs9323695	0.96[YRI][hapmap];0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv832840	chr14:81270033-81423583	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81285000-81311200	Weak transcription	Ovary	ovary
2	chr14:81285200-81315600	Weak transcription	HSMM	muscle
3	chr14:81290600-81311200	Weak transcription	Fetal Stomach	stomach
4	chr14:81291600-81310800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr14:81291600-81331000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr14:81291800-81344200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr14:81292200-81328200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr14:81304800-81314400	Weak transcription	Thymus	Thymus
9	chr14:81305200-81321600	Weak transcription	Fetal Thymus	thymus
10	chr14:81306600-81311200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr14:81307000-81310800	Weak transcription	Dnd41	blood
12	chr14:81310000-81315600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr14:81310200-81310800	ZNF genes & repeats	A549	lung
14	chr14:81310600-81315600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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