Variant report

Variant	rs10149433
Chromosome Location	chr14:81223419-81223420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10130315	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10130613	0.96[YRI][hapmap]
rs10130908	0.92[YRI][hapmap]
rs10132840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10132917	0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10133039	0.96[YRI][hapmap]
rs10133081	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10133159	0.81[AFR][1000 genomes]
rs10133213	0.88[YRI][hapmap]
rs10134049	0.96[YRI][hapmap]
rs10134286	0.96[YRI][hapmap]
rs10137290	0.92[YRI][hapmap]
rs10137669	0.96[YRI][hapmap]
rs10137867	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10139039	0.95[YRI][hapmap]
rs10139628	0.96[YRI][hapmap];0.91[AFR][1000 genomes]
rs10139720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10141192	0.96[YRI][hapmap]
rs10142541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10142758	0.92[YRI][hapmap]
rs10145160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10145860	0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10146123	0.96[YRI][hapmap]
rs10148517	0.96[YRI][hapmap]
rs10150391	0.96[YRI][hapmap]
rs10151410	0.96[YRI][hapmap]
rs10438029	0.96[YRI][hapmap]
rs11844724	0.92[YRI][hapmap]
rs11845100	0.92[YRI][hapmap]
rs11845772	0.91[YRI][hapmap]
rs11847481	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11848607	0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11848667	0.81[AMR][1000 genomes]
rs11848744	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11849246	0.85[YRI][hapmap]
rs11850467	0.88[YRI][hapmap]
rs11851465	0.96[YRI][hapmap]
rs11851697	0.96[YRI][hapmap]
rs17111059	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17111220	0.92[YRI][hapmap]
rs17111229	0.85[YRI][hapmap]
rs1863767	0.90[YRI][hapmap]
rs2060594	1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2060595	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2195102	0.88[YRI][hapmap]
rs28394640	0.82[AFR][1000 genomes]
rs28451240	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs28535411	0.99[AFR][1000 genomes]
rs28608605	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs28613768	0.99[AFR][1000 genomes]
rs28619915	0.83[AFR][1000 genomes]
rs28640160	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs28702417	0.81[AMR][1000 genomes]
rs28718333	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs28718570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35892759	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4636844	0.98[AFR][1000 genomes]
rs56291068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58696376	0.90[AFR][1000 genomes]
rs58842394	0.83[AFR][1000 genomes]
rs59851850	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7140210	0.92[YRI][hapmap];0.81[AMR][1000 genomes]
rs7146496	0.88[YRI][hapmap]
rs7152740	0.88[YRI][hapmap]
rs7152900	0.85[YRI][hapmap]
rs7153324	0.92[YRI][hapmap]
rs7154345	0.96[YRI][hapmap]
rs74064526	0.81[AMR][1000 genomes]
rs74064527	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs74064529	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs8010968	0.96[YRI][hapmap]
rs8015542	0.96[YRI][hapmap]
rs8019256	0.92[YRI][hapmap];0.99[AFR][1000 genomes]
rs9323695	0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1035295	chr14:81180999-81236636	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81182800-81224600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr14:81192800-81305400	Weak transcription	Primary B cells from cord blood	blood
3	chr14:81199800-81248600	Weak transcription	Primary T cells from cord blood	blood
4	chr14:81203800-81229000	Weak transcription	Left Ventricle	heart
5	chr14:81205000-81261000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr14:81206400-81226800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr14:81207200-81232600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr14:81207600-81226200	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr14:81207600-81230800	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr14:81207600-81265400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr14:81208400-81240400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr14:81208800-81232400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr14:81209400-81227800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr14:81209400-81229000	Weak transcription	Fetal Lung	lung
15	chr14:81209600-81248200	Weak transcription	HSMM	muscle
16	chr14:81210600-81230400	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr14:81212800-81227000	Weak transcription	Adipose Nuclei	Adipose
18	chr14:81213400-81231200	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr14:81215800-81236200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr14:81219200-81228600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr14:81219800-81223600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr14:81219800-81224000	Strong transcription	Dnd41	blood
23	chr14:81220200-81224800	Strong transcription	Fetal Thymus	thymus
24	chr14:81220600-81227000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr14:81220600-81229200	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr14:81221000-81238600	Weak transcription	Ovary	ovary
27	chr14:81221200-81230800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr14:81221400-81238600	Weak transcription	Thymus	Thymus
29	chr14:81221600-81236200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr14:81221800-81229000	Weak transcription	NHDF-Ad	bronchial
31	chr14:81222400-81260000	Weak transcription	Fetal Brain Female	brain
32	chr14:81223000-81230800	Weak transcription	NHEK	skin
33	chr14:81223200-81229000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr14:81223200-81250800	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr14:81223400-81234000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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