Variant report

Variant	rs74064527
Chromosome Location	chr14:81165910-81165911
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10130315	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10132840	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10132917	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10133081	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10133159	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10137867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10139628	0.84[AFR][1000 genomes]
rs10139720	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10142541	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10145160	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10145860	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10149433	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11847481	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs11848607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11848667	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11848744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17111059	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2060594	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2060595	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28451240	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28535411	0.84[AFR][1000 genomes]
rs28608605	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28613768	0.84[AFR][1000 genomes]
rs28640160	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28702417	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28718333	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28718570	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs35892759	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs4636844	0.83[AFR][1000 genomes]
rs56291068	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs58696376	0.83[AFR][1000 genomes]
rs59851850	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7140210	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064526	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064529	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs8019256	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81147400-81171400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr14:81148000-81167400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr14:81148400-81167200	Weak transcription	Fetal Thymus	thymus
4	chr14:81149000-81171200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:81160000-81168400	Weak transcription	Primary T cells from cord blood	blood
6	chr14:81162800-81166400	Weak transcription	GM12878-XiMat	blood
7	chr14:81163200-81177800	Weak transcription	A549	lung
8	chr14:81163600-81166200	Weak transcription	Thymus	Thymus
9	chr14:81165600-81169000	Strong transcription	Dnd41	blood
10	chr14:81165800-81168200	Weak transcription	Esophagus	oesophagus

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