Variant report

Variant	rs11847481
Chromosome Location	chr14:81181503-81181504
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81163145..81165806-chr14:81181268..81184097,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10130315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10132840	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10132917	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10133081	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10133159	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10137867	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10139628	0.89[AFR][1000 genomes]
rs10139720	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10142541	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10145160	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10145860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10149433	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11848607	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs11848667	0.91[AMR][1000 genomes]
rs11848744	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs17111059	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2060594	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2060595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28394640	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28451240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28535411	0.97[AFR][1000 genomes]
rs28608605	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28613768	0.97[AFR][1000 genomes]
rs28619915	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28640160	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28702417	0.91[AMR][1000 genomes]
rs28718333	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28718570	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs35892759	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4636844	0.96[AFR][1000 genomes]
rs56291068	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs58696376	0.88[AFR][1000 genomes]
rs58842394	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs59851850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7140210	0.91[AMR][1000 genomes]
rs74064526	0.91[AMR][1000 genomes]
rs74064527	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs74064529	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8019256	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1035295	chr14:81180999-81236636	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81168400-81184200	Weak transcription	Thymus	Thymus
2	chr14:81172400-81185200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:81172600-81185200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr14:81178800-81182200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:81179200-81186200	Enhancers	Dnd41	blood
6	chr14:81180200-81181600	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr14:81180200-81181600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr14:81181200-81181600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr14:81181400-81182000	Enhancers	Fetal Thymus	thymus

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