Variant report

Variant	rs74064526
Chromosome Location	chr14:81164310-81164311
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10130315	0.91[AMR][1000 genomes]
rs10132840	0.81[AMR][1000 genomes]
rs10132917	0.81[AMR][1000 genomes]
rs10133081	0.81[AMR][1000 genomes]
rs10133159	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10137867	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10139720	0.81[AMR][1000 genomes]
rs10142541	0.81[AMR][1000 genomes]
rs10145160	0.81[AMR][1000 genomes]
rs10145860	0.91[AMR][1000 genomes]
rs10149433	0.81[AMR][1000 genomes]
rs11847481	0.91[AMR][1000 genomes]
rs11848607	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11848667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11848744	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17111059	0.81[AMR][1000 genomes]
rs2060594	0.91[AMR][1000 genomes]
rs2060595	0.91[AMR][1000 genomes]
rs28451240	0.91[AMR][1000 genomes]
rs28608605	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28640160	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28702417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28718333	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28718570	0.81[AMR][1000 genomes]
rs35892759	0.91[AMR][1000 genomes]
rs56291068	0.81[AMR][1000 genomes]
rs59851850	0.91[AMR][1000 genomes]
rs7140210	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064527	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064529	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81147400-81171400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr14:81148000-81167400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr14:81148400-81167200	Weak transcription	Fetal Thymus	thymus
4	chr14:81149000-81171200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:81160000-81168400	Weak transcription	Primary T cells from cord blood	blood
6	chr14:81162800-81166400	Weak transcription	GM12878-XiMat	blood
7	chr14:81163200-81165600	Weak transcription	Dnd41	blood
8	chr14:81163200-81177800	Weak transcription	A549	lung
9	chr14:81163600-81166200	Weak transcription	Thymus	Thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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