Variant report

Variant	rs11848667
Chromosome Location	chr14:81149295-81149296
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10130315	0.91[AMR][1000 genomes]
rs10132840	0.81[AMR][1000 genomes]
rs10132917	0.81[AMR][1000 genomes]
rs10133081	0.81[AMR][1000 genomes]
rs10133159	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10137867	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10139720	0.81[AMR][1000 genomes]
rs10142541	0.81[AMR][1000 genomes]
rs10145160	0.81[AMR][1000 genomes]
rs10145860	0.91[AMR][1000 genomes]
rs10149433	0.81[AMR][1000 genomes]
rs11847481	0.91[AMR][1000 genomes]
rs11848607	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11848744	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17111059	0.81[AMR][1000 genomes]
rs2060594	0.91[AMR][1000 genomes]
rs2060595	0.91[AMR][1000 genomes]
rs28451240	0.91[AMR][1000 genomes]
rs28608605	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28640160	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28702417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28718333	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28718570	0.81[AMR][1000 genomes]
rs35892759	0.91[AMR][1000 genomes]
rs56291068	0.81[AMR][1000 genomes]
rs59851850	0.91[AMR][1000 genomes]
rs7140210	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064527	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064529	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1039554	chr14:81113167-81156335	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
4	nsv1051964	chr14:81113167-81156847	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81144200-81150200	ZNF genes & repeats	Dnd41	blood
2	chr14:81146200-81149600	ZNF genes & repeats	Thymus	Thymus
3	chr14:81147400-81171400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr14:81148000-81167400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr14:81148400-81167200	Weak transcription	Fetal Thymus	thymus
6	chr14:81149000-81171200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links