Variant report

Variant	rs10145160
Chromosome Location	chr14:81213478-81213479
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81213361..81216342-chr14:81220503..81223223,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10130315	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10132840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10132917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10133081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10133159	0.81[AFR][1000 genomes]
rs10137867	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10139628	0.91[AFR][1000 genomes]
rs10139720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10142541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10145860	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10149433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11847481	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11848607	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11848667	0.81[AMR][1000 genomes]
rs11848744	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs17111059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2060594	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2060595	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs28394640	0.82[AFR][1000 genomes]
rs28451240	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs28535411	0.99[AFR][1000 genomes]
rs28608605	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs28613768	0.99[AFR][1000 genomes]
rs28619915	0.83[AFR][1000 genomes]
rs28640160	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs28702417	0.81[AMR][1000 genomes]
rs28718333	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs28718570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35892759	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4636844	0.98[AFR][1000 genomes]
rs56291068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58696376	0.90[AFR][1000 genomes]
rs58842394	0.83[AFR][1000 genomes]
rs59851850	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7140210	0.81[AMR][1000 genomes]
rs74064526	0.81[AMR][1000 genomes]
rs74064527	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs74064529	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs8019256	0.99[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1035295	chr14:81180999-81236636	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81182800-81224600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr14:81185800-81221200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr14:81192800-81221000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:81192800-81305400	Weak transcription	Primary B cells from cord blood	blood
5	chr14:81193000-81220800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr14:81195400-81223000	Weak transcription	Pancreas	Pancrea
7	chr14:81198200-81220000	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr14:81199800-81248600	Weak transcription	Primary T cells from cord blood	blood
9	chr14:81203800-81229000	Weak transcription	Left Ventricle	heart
10	chr14:81204600-81217600	Strong transcription	Dnd41	blood
11	chr14:81205000-81261000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr14:81205200-81222800	Weak transcription	HMEC	breast
13	chr14:81206400-81226800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr14:81207200-81232600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr14:81207600-81226200	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr14:81207600-81230800	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr14:81207600-81265400	Weak transcription	Primary hematopoietic stem cells	blood
18	chr14:81208000-81215000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr14:81208400-81240400	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr14:81208800-81232400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr14:81209400-81227800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr14:81209400-81229000	Weak transcription	Fetal Lung	lung
23	chr14:81209600-81248200	Weak transcription	HSMM	muscle
24	chr14:81210600-81220400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr14:81210600-81223400	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr14:81210600-81230400	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr14:81211600-81213800	Weak transcription	Thymus	Thymus
28	chr14:81211600-81215600	Weak transcription	Fetal Thymus	thymus
29	chr14:81211600-81220200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr14:81212800-81227000	Weak transcription	Adipose Nuclei	Adipose
31	chr14:81213400-81231200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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