Variant report

Variant	rs28613768
Chromosome Location	chr14:81234653-81234654
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10130315	0.97[AFR][1000 genomes]
rs10130613	0.81[AFR][1000 genomes]
rs10132840	0.99[AFR][1000 genomes]
rs10132917	0.99[AFR][1000 genomes]
rs10133081	0.99[AFR][1000 genomes]
rs10133159	0.80[AFR][1000 genomes]
rs10137867	0.84[AFR][1000 genomes]
rs10139628	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10139720	0.99[AFR][1000 genomes]
rs10141192	0.81[AFR][1000 genomes]
rs10142541	0.99[AFR][1000 genomes]
rs10145160	0.99[AFR][1000 genomes]
rs10145860	0.97[AFR][1000 genomes]
rs10149433	0.99[AFR][1000 genomes]
rs11847481	0.97[AFR][1000 genomes]
rs11848607	0.84[AFR][1000 genomes]
rs11848744	0.84[AFR][1000 genomes]
rs11849246	0.81[AFR][1000 genomes]
rs17111059	0.99[AFR][1000 genomes]
rs2060594	0.85[AFR][1000 genomes]
rs2060595	0.97[AFR][1000 genomes]
rs28394640	0.81[AFR][1000 genomes]
rs28451240	0.97[AFR][1000 genomes]
rs28510159	0.81[AFR][1000 genomes]
rs28535411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28608605	0.96[AFR][1000 genomes]
rs28619915	0.82[AFR][1000 genomes]
rs28631251	0.81[AFR][1000 genomes]
rs28640160	0.93[AFR][1000 genomes]
rs28718333	0.96[AFR][1000 genomes]
rs28718570	0.99[AFR][1000 genomes]
rs35892759	0.95[AFR][1000 genomes]
rs4636844	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56291068	0.99[AFR][1000 genomes]
rs58696376	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58842394	0.82[AFR][1000 genomes]
rs59851850	0.97[AFR][1000 genomes]
rs74064527	0.84[AFR][1000 genomes]
rs74064529	0.96[AFR][1000 genomes]
rs8019256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1035295	chr14:81180999-81236636	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81192800-81305400	Weak transcription	Primary B cells from cord blood	blood
2	chr14:81199800-81248600	Weak transcription	Primary T cells from cord blood	blood
3	chr14:81205000-81261000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr14:81207600-81265400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr14:81208400-81240400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr14:81209600-81248200	Weak transcription	HSMM	muscle
7	chr14:81215800-81236200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr14:81221000-81238600	Weak transcription	Ovary	ovary
9	chr14:81221400-81238600	Weak transcription	Thymus	Thymus
10	chr14:81221600-81236200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr14:81222400-81260000	Weak transcription	Fetal Brain Female	brain
12	chr14:81223200-81250800	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr14:81227000-81260800	Weak transcription	NH-A	brain
14	chr14:81227400-81258000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr14:81227600-81236200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr14:81228200-81240800	Weak transcription	Fetal Thymus	thymus
17	chr14:81229400-81238800	Weak transcription	Left Ventricle	heart
18	chr14:81229800-81236200	Weak transcription	NHDF-Ad	bronchial
19	chr14:81231200-81251400	Weak transcription	A549	lung
20	chr14:81231600-81236200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr14:81232000-81251200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr14:81232400-81235200	Enhancers	NHEK	skin
23	chr14:81232400-81260800	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr14:81232600-81236400	Weak transcription	Dnd41	blood
25	chr14:81233600-81246200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr14:81234000-81235400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr14:81234200-81235800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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