Variant report

Variant	rs58842394
Chromosome Location	chr14:81196537-81196538
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10130315	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10132840	0.83[AFR][1000 genomes]
rs10132917	0.83[AFR][1000 genomes]
rs10133081	0.83[AFR][1000 genomes]
rs10139720	0.83[AFR][1000 genomes]
rs10142541	0.83[AFR][1000 genomes]
rs10145160	0.83[AFR][1000 genomes]
rs10145860	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10149433	0.83[AFR][1000 genomes]
rs11847481	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17111025	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs17111059	0.83[AFR][1000 genomes]
rs2060594	0.83[AMR][1000 genomes]
rs2060595	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28451240	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28535411	0.82[AFR][1000 genomes]
rs28608605	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28613768	0.82[AFR][1000 genomes]
rs28619915	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28640160	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28718333	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28718570	0.83[AFR][1000 genomes]
rs35892759	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4636844	0.81[AFR][1000 genomes]
rs56291068	0.83[AFR][1000 genomes]
rs59851850	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs74064529	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs8019256	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1035295	chr14:81180999-81236636	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81182000-81206400	Weak transcription	Fetal Thymus	thymus
2	chr14:81182800-81224600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr14:81185600-81208600	Weak transcription	Thymus	Thymus
4	chr14:81185800-81221200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr14:81192800-81221000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:81192800-81305400	Weak transcription	Primary B cells from cord blood	blood
7	chr14:81193000-81220800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr14:81193600-81209000	Weak transcription	HSMM	muscle
9	chr14:81195400-81223000	Weak transcription	Pancreas	Pancrea
10	chr14:81196200-81198000	Strong transcription	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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