Variant report

Variant	rs10139628
Chromosome Location	chr14:81266717-81266718
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10129919	0.81[YRI][hapmap]
rs10130150	1.00[MEX][hapmap]
rs10130315	0.83[ASW][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes]
rs10130613	0.81[ASW][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs10130908	0.96[YRI][hapmap]
rs10132840	0.91[AFR][1000 genomes]
rs10132917	0.92[YRI][hapmap];0.91[AFR][1000 genomes]
rs10133039	1.00[YRI][hapmap]
rs10133081	0.95[YRI][hapmap];0.91[AFR][1000 genomes]
rs10133213	0.80[ASW][hapmap];0.90[LWK][hapmap];0.92[YRI][hapmap]
rs10134049	1.00[YRI][hapmap]
rs10134286	1.00[YRI][hapmap]
rs10137290	0.96[YRI][hapmap]
rs10137669	0.91[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap]
rs10137867	0.84[AFR][1000 genomes]
rs10139039	1.00[YRI][hapmap]
rs10139720	0.91[AFR][1000 genomes]
rs10141192	0.81[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs10142541	0.91[AFR][1000 genomes]
rs10142758	0.96[YRI][hapmap]
rs10145160	0.91[AFR][1000 genomes]
rs10145860	0.92[YRI][hapmap];0.89[AFR][1000 genomes]
rs10146123	1.00[YRI][hapmap]
rs10148517	1.00[YRI][hapmap]
rs10149425	1.00[MEX][hapmap]
rs10149433	0.96[YRI][hapmap];0.91[AFR][1000 genomes]
rs10150391	0.92[YRI][hapmap]
rs10151410	1.00[YRI][hapmap]
rs10438029	1.00[YRI][hapmap]
rs11844724	0.96[YRI][hapmap];0.83[AFR][1000 genomes]
rs11845100	0.96[YRI][hapmap]
rs11845772	0.95[YRI][hapmap]
rs11847481	0.89[AFR][1000 genomes]
rs11848607	0.88[YRI][hapmap];0.84[AFR][1000 genomes]
rs11848744	0.84[AFR][1000 genomes]
rs11849246	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs11850467	0.96[YRI][hapmap]
rs11851465	1.00[YRI][hapmap]
rs11851697	0.83[ASW][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs12587252	1.00[MEX][hapmap]
rs17111059	0.96[YRI][hapmap];0.91[AFR][1000 genomes]
rs17111220	0.96[YRI][hapmap]
rs17111229	0.92[YRI][hapmap]
rs1863767	0.95[YRI][hapmap]
rs2060594	0.95[YRI][hapmap];0.84[AFR][1000 genomes]
rs2060595	0.83[ASW][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes]
rs2195102	0.96[YRI][hapmap]
rs28451240	0.89[AFR][1000 genomes]
rs28510159	0.84[AFR][1000 genomes]
rs28535411	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28608605	0.88[AFR][1000 genomes]
rs28613768	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28631251	0.84[AFR][1000 genomes]
rs28640160	0.90[AFR][1000 genomes]
rs28718333	0.88[AFR][1000 genomes]
rs28718570	0.91[AFR][1000 genomes]
rs34529456	0.81[AFR][1000 genomes]
rs35892759	0.87[AFR][1000 genomes]
rs4636844	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56291068	0.91[AFR][1000 genomes]
rs58696376	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59851850	0.89[AFR][1000 genomes]
rs7140210	1.00[MEX][hapmap];0.88[YRI][hapmap]
rs7146496	0.91[ASW][hapmap];0.93[LWK][hapmap];0.83[MKK][hapmap];0.92[YRI][hapmap]
rs7152740	0.83[ASW][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.92[YRI][hapmap]
rs7152900	0.92[YRI][hapmap]
rs7153324	0.83[ASW][hapmap];0.93[LWK][hapmap];0.82[MKK][hapmap];0.96[YRI][hapmap]
rs7154345	1.00[YRI][hapmap]
rs74064527	0.84[AFR][1000 genomes]
rs74064529	0.88[AFR][1000 genomes]
rs8010968	0.91[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap]
rs8015542	0.91[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap]
rs8019256	0.90[LWK][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9323695	0.83[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.96[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81192800-81305400	Weak transcription	Primary B cells from cord blood	blood
2	chr14:81238000-81267000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr14:81246800-81271600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr14:81250200-81268400	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr14:81250400-81266800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr14:81251800-81282600	Weak transcription	A549	lung
7	chr14:81252200-81268200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr14:81256400-81271000	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr14:81259400-81274000	Weak transcription	Aorta	Aorta
10	chr14:81259400-81274000	Weak transcription	Pancreas	Pancrea
11	chr14:81259400-81274200	Weak transcription	Thymus	Thymus
12	chr14:81259400-81278400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr14:81259600-81266800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr14:81264800-81269400	Weak transcription	Fetal Lung	lung
15	chr14:81265600-81268000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr14:81265600-81277200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr14:81265600-81284400	Weak transcription	Fetal Thymus	thymus
18	chr14:81265800-81274600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr14:81266400-81267000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
20	chr14:81266400-81267400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr14:81266400-81267400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr14:81266400-81267400	ZNF genes & repeats	Dnd41	blood
23	chr14:81266600-81266800	ZNF genes & repeats	Primary T cells from cord blood	blood
24	chr14:81266600-81267200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr14:81266600-81267400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr14:81266600-81267400	Strong transcription	HSMM	muscle

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