Variant report

Variant	rs10133039
Chromosome Location	chr14:81322369-81322370
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:79808988..79811235-chr14:81320946..81323442,2	MCF-7	breast:

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10129361	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10130315	0.96[YRI][hapmap]
rs10130613	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10130687	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10130858	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10130908	0.96[YRI][hapmap];0.98[AFR][1000 genomes]
rs10132917	0.92[YRI][hapmap]
rs10133081	0.96[YRI][hapmap]
rs10133213	0.92[YRI][hapmap];1.00[AMR][1000 genomes]
rs10133246	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10134049	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10134286	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs10137290	0.96[YRI][hapmap];0.98[AFR][1000 genomes]
rs10137669	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs10139039	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10139626	0.91[AFR][1000 genomes]
rs10139628	1.00[YRI][hapmap]
rs10141192	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10142758	0.96[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10143757	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10144178	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10144828	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10145860	0.92[YRI][hapmap]
rs10146123	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10148517	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10149433	0.96[YRI][hapmap]
rs10150391	0.92[YRI][hapmap]
rs10151410	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10438029	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11844105	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11844724	0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11844869	0.91[AFR][1000 genomes]
rs11845100	0.96[YRI][hapmap];0.98[AFR][1000 genomes]
rs11845556	1.00[AMR][1000 genomes]
rs11845772	0.95[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11846509	1.00[AMR][1000 genomes]
rs11847064	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11848413	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11848607	0.89[YRI][hapmap]
rs11849246	0.90[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11849362	0.98[AFR][1000 genomes]
rs11850467	0.92[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11851465	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11851697	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12323870	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12587252	0.81[AMR][1000 genomes]
rs17111059	0.96[YRI][hapmap]
rs17111220	0.96[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17111229	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs1863767	0.95[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2060594	0.96[YRI][hapmap]
rs2060595	0.96[YRI][hapmap]
rs2195102	0.92[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28445165	0.98[AFR][1000 genomes]
rs28510159	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28576038	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28609268	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28631251	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28638187	0.98[AFR][1000 genomes]
rs28771783	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28811052	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28856091	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34336276	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34529456	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34929621	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55806640	0.93[AFR][1000 genomes]
rs55908787	0.93[AFR][1000 genomes]
rs55956216	0.81[AMR][1000 genomes]
rs56835406	0.93[AFR][1000 genomes]
rs60459982	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60831956	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7140210	0.88[YRI][hapmap]
rs7142436	0.93[AFR][1000 genomes]
rs7146496	0.92[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7146963	1.00[AMR][1000 genomes]
rs7152740	0.92[YRI][hapmap];1.00[AMR][1000 genomes]
rs7152900	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs7153324	0.96[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7153585	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7154345	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs7159966	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064586	0.93[AFR][1000 genomes]
rs74064589	0.93[AFR][1000 genomes]
rs74064591	0.98[AFR][1000 genomes]
rs74064754	1.00[AMR][1000 genomes]
rs74066925	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8010968	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8015542	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8019256	0.96[YRI][hapmap]
rs9323695	0.96[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9805948	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv832840	chr14:81270033-81423583	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81291600-81331000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr14:81291800-81344200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr14:81292200-81328200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr14:81311400-81322800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr14:81316600-81338800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr14:81317000-81326000	Weak transcription	Dnd41	blood
7	chr14:81317800-81328400	Weak transcription	HSMM	muscle
8	chr14:81317800-81333400	Weak transcription	Psoas Muscle	Psoas
9	chr14:81317800-81334400	Weak transcription	A549	lung
10	chr14:81318000-81332800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr14:81320000-81331800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr14:81320600-81326000	Weak transcription	NHDF-Ad	bronchial
13	chr14:81321600-81322400	Strong transcription	Fetal Thymus	thymus
14	chr14:81321600-81382200	Weak transcription	Left Ventricle	heart
15	chr14:81322000-81324000	Strong transcription	Thymus	Thymus

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