Variant report

Variant	rs34336276
Chromosome Location	chr14:81338842-81338843
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10129361	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10130613	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10130687	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10130858	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10130908	0.89[AFR][1000 genomes]
rs10133039	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10133213	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10133246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10134049	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10134286	0.89[AFR][1000 genomes]
rs10137290	0.89[AFR][1000 genomes]
rs10137669	0.93[AFR][1000 genomes]
rs10139039	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10139626	0.91[AFR][1000 genomes]
rs10141192	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10142758	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10143757	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10144178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10144828	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10146123	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10148517	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10150391	0.82[AFR][1000 genomes]
rs10151410	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10151557	0.88[AFR][1000 genomes]
rs10438029	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11844105	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11844724	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11844869	0.91[AFR][1000 genomes]
rs11845100	0.89[AFR][1000 genomes]
rs11845556	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11845772	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11846509	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11847064	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11848413	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11849246	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11849362	0.89[AFR][1000 genomes]
rs11850467	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11851465	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11851697	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12323870	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12587252	0.81[AMR][1000 genomes]
rs17111220	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17111229	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1863767	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2195102	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28445165	0.89[AFR][1000 genomes]
rs28510159	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28576038	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28609268	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28631251	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28638187	0.89[AFR][1000 genomes]
rs28771783	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28811052	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28856091	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34529456	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34929621	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55806640	0.93[AFR][1000 genomes]
rs55908787	0.93[AFR][1000 genomes]
rs55956216	0.81[AMR][1000 genomes]
rs56835406	0.93[AFR][1000 genomes]
rs60459982	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60831956	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7142436	0.93[AFR][1000 genomes]
rs7146496	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7146963	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7152740	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7152900	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7153324	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7153585	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7154345	0.89[AFR][1000 genomes]
rs7159966	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064586	0.93[AFR][1000 genomes]
rs74064589	0.93[AFR][1000 genomes]
rs74064591	0.89[AFR][1000 genomes]
rs74064754	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74066925	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8010968	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8015542	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9323695	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9805948	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv832840	chr14:81270033-81423583	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
3	esv3406404	chr14:81338702-81339139	Strong transcription Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81291800-81344200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr14:81321600-81382200	Weak transcription	Left Ventricle	heart
3	chr14:81326600-81339800	Weak transcription	Fetal Thymus	thymus
4	chr14:81329200-81359400	Weak transcription	HSMM	muscle
5	chr14:81330400-81350600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr14:81331200-81344800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr14:81332600-81344400	Weak transcription	Ovary	ovary
8	chr14:81332600-81345800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr14:81332800-81344000	Weak transcription	Thymus	Thymus
10	chr14:81333000-81344600	Weak transcription	Aorta	Aorta
11	chr14:81334800-81344400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr14:81335000-81344200	Weak transcription	A549	lung
13	chr14:81336000-81344400	Weak transcription	NHEK	skin
14	chr14:81336200-81342200	Strong transcription	Dnd41	blood
15	chr14:81336600-81358600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr14:81337200-81344200	Weak transcription	Primary B cells from cord blood	blood
17	chr14:81337200-81357400	Weak transcription	Primary T cells from cord blood	blood
18	chr14:81337800-81348000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr14:81338000-81340200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr14:81338000-81344800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr14:81338000-81346200	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr14:81338200-81348000	Weak transcription	Liver	Liver
23	chr14:81338400-81350600	Weak transcription	Duodenum Mucosa	Duodenum
24	chr14:81338600-81340000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr14:81338800-81339400	Enhancers	Muscle Satellite Cultured Cells	--
26	chr14:81338800-81340800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr14:81338800-81341400	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr14:81338800-81347600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr14:81338800-81353800	Weak transcription	Primary T cells fromperipheralblood	blood

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