Variant report

Variant	rs11848607
Chromosome Location	chr14:81149227-81149228
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10130315	0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10130613	0.88[YRI][hapmap]
rs10130908	0.85[YRI][hapmap]
rs10132840	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10132917	0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10133039	0.89[YRI][hapmap]
rs10133081	0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10133159	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10134049	0.88[YRI][hapmap]
rs10134286	0.89[YRI][hapmap]
rs10137290	0.85[YRI][hapmap]
rs10137669	0.88[YRI][hapmap]
rs10137867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10139039	0.87[YRI][hapmap]
rs10139628	0.88[YRI][hapmap];0.84[AFR][1000 genomes]
rs10139720	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10141192	0.88[YRI][hapmap]
rs10142541	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10145160	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10145860	0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10146123	0.89[YRI][hapmap]
rs10149433	0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10151410	0.89[YRI][hapmap]
rs11844724	0.85[YRI][hapmap]
rs11845100	0.85[YRI][hapmap]
rs11847481	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs11848667	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11848744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11851465	0.89[YRI][hapmap]
rs11851697	0.88[YRI][hapmap]
rs17111059	0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2060594	0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2060595	0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28451240	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28535411	0.84[AFR][1000 genomes]
rs28608605	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28613768	0.84[AFR][1000 genomes]
rs28640160	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28702417	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28718333	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28718570	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs35892759	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs4636844	0.83[AFR][1000 genomes]
rs56291068	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs58696376	0.83[AFR][1000 genomes]
rs59851850	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7140210	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7146496	0.88[YRI][hapmap]
rs7154345	0.89[YRI][hapmap]
rs74064526	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064529	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs8019256	0.84[YRI][hapmap];0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1039554	chr14:81113167-81156335	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
4	nsv1051964	chr14:81113167-81156847	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81144200-81150200	ZNF genes & repeats	Dnd41	blood
2	chr14:81146200-81149600	ZNF genes & repeats	Thymus	Thymus
3	chr14:81147400-81171400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr14:81148000-81167400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr14:81148400-81167200	Weak transcription	Fetal Thymus	thymus
6	chr14:81149000-81171200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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