Variant report

Variant	rs10130150
Chromosome Location	chr14:81321900-81321901
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10130315	1.00[MEX][hapmap]
rs10130613	1.00[MEX][hapmap]
rs10137669	1.00[MEX][hapmap]
rs10139628	1.00[MEX][hapmap]
rs10141192	1.00[MEX][hapmap]
rs10149425	1.00[MEX][hapmap]
rs11851697	1.00[MEX][hapmap]
rs12587252	1.00[MEX][hapmap]
rs2060595	1.00[MEX][hapmap]
rs7140210	1.00[MEX][hapmap]
rs7152740	1.00[MEX][hapmap]
rs8010968	1.00[MEX][hapmap]
rs8015542	1.00[MEX][hapmap]
rs9323695	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv832840	chr14:81270033-81423583	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81291600-81331000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr14:81291800-81344200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr14:81292200-81328200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr14:81311400-81322800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr14:81315000-81322000	Weak transcription	Thymus	Thymus
6	chr14:81316600-81338800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr14:81317000-81326000	Weak transcription	Dnd41	blood
8	chr14:81317800-81328400	Weak transcription	HSMM	muscle
9	chr14:81317800-81333400	Weak transcription	Psoas Muscle	Psoas
10	chr14:81317800-81334400	Weak transcription	A549	lung
11	chr14:81318000-81332800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr14:81320000-81322200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr14:81320000-81331800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr14:81320600-81326000	Weak transcription	NHDF-Ad	bronchial
15	chr14:81321600-81322400	Strong transcription	Fetal Thymus	thymus
16	chr14:81321600-81382200	Weak transcription	Left Ventricle	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links