Variant report

Variant	rs74064587
Chromosome Location	chr14:81301499-81301500
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81300294..81302523-chr14:81306225..81308137,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10130908	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10134286	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10137290	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10137669	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10139626	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10143757	0.82[AFR][1000 genomes]
rs10144828	0.82[AFR][1000 genomes]
rs10146123	0.87[AFR][1000 genomes]
rs10151410	0.83[AFR][1000 genomes]
rs11844869	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs11845100	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11848413	0.82[AFR][1000 genomes]
rs11849362	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11851697	0.81[AFR][1000 genomes]
rs28445165	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs28576038	0.85[AFR][1000 genomes]
rs28638187	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs34529456	0.81[AFR][1000 genomes]
rs55806640	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs55908787	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs56835406	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs60831956	0.82[AFR][1000 genomes]
rs7142436	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7146496	0.82[AFR][1000 genomes]
rs7154345	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7159966	0.86[AFR][1000 genomes]
rs74064586	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs74064589	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs74064591	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv832840	chr14:81270033-81423583	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81192800-81305400	Weak transcription	Primary B cells from cord blood	blood
2	chr14:81281600-81304200	Weak transcription	Primary T cells from cord blood	blood
3	chr14:81285000-81304600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr14:81285000-81310200	Weak transcription	A549	lung
5	chr14:81285000-81311200	Weak transcription	Ovary	ovary
6	chr14:81285200-81315600	Weak transcription	HSMM	muscle
7	chr14:81286200-81305800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr14:81288000-81307800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr14:81288800-81305800	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr14:81290600-81311200	Weak transcription	Fetal Stomach	stomach
11	chr14:81291200-81305600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr14:81291400-81305200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr14:81291400-81306600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr14:81291600-81304000	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr14:81291600-81310000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr14:81291600-81310800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr14:81291600-81331000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr14:81291800-81302400	Weak transcription	Fetal Thymus	thymus
19	chr14:81291800-81303400	Weak transcription	Left Ventricle	heart
20	chr14:81291800-81307000	Strong transcription	Dnd41	blood
21	chr14:81291800-81307200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr14:81291800-81307800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr14:81291800-81344200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr14:81292200-81328200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr14:81292800-81307000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr14:81294400-81309000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr14:81295600-81308800	Weak transcription	Brain Substantia Nigra	brain
28	chr14:81301200-81301600	Strong transcription	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links