Variant report

Variant	rs7144235
Chromosome Location	chr14:81413533-81413534
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10130066	1.00[CEU][hapmap]
rs10130613	0.88[YRI][hapmap]
rs10130908	0.81[YRI][hapmap]
rs10133039	0.85[YRI][hapmap]
rs10133213	0.88[YRI][hapmap]
rs10134049	0.85[YRI][hapmap]
rs10134286	0.85[YRI][hapmap]
rs10136949	0.90[AMR][1000 genomes]
rs10137290	0.82[YRI][hapmap]
rs10137669	0.88[YRI][hapmap]
rs10138961	0.80[AMR][1000 genomes]
rs10139039	0.84[YRI][hapmap]
rs10139168	0.90[AMR][1000 genomes]
rs10139628	0.88[YRI][hapmap]
rs10141192	0.88[YRI][hapmap]
rs10141257	0.80[AMR][1000 genomes]
rs10142758	0.89[YRI][hapmap]
rs10146123	0.85[YRI][hapmap]
rs10148517	0.85[YRI][hapmap]
rs10149425	0.90[AMR][1000 genomes]
rs10149433	0.82[YRI][hapmap]
rs10150391	0.88[YRI][hapmap]
rs10151410	0.85[YRI][hapmap]
rs10152059	0.80[AMR][1000 genomes]
rs10438029	0.85[YRI][hapmap]
rs11844724	0.82[YRI][hapmap]
rs11844944	0.80[AMR][1000 genomes]
rs11845100	0.82[YRI][hapmap]
rs11845184	0.80[AMR][1000 genomes]
rs11845772	0.88[YRI][hapmap]
rs11847561	0.80[AMR][1000 genomes]
rs11847808	0.90[AMR][1000 genomes]
rs11850467	0.85[YRI][hapmap]
rs11850795	0.90[AMR][1000 genomes]
rs11850804	0.90[AMR][1000 genomes]
rs11850866	0.90[AMR][1000 genomes]
rs11850934	0.90[AMR][1000 genomes]
rs11851465	0.85[YRI][hapmap]
rs11851697	0.88[YRI][hapmap]
rs12586298	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12586860	0.81[ASN][1000 genomes]
rs12587252	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.87[ASN][1000 genomes]
rs12588700	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12588767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12589529	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs17111059	0.82[YRI][hapmap]
rs17111069	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17111220	0.89[YRI][hapmap]
rs17111229	0.82[YRI][hapmap]
rs2195102	0.85[YRI][hapmap]
rs2371415	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs28376437	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs28504619	0.90[AMR][1000 genomes]
rs28533809	0.80[AMR][1000 genomes]
rs28534062	0.90[AMR][1000 genomes]
rs28685026	0.90[AMR][1000 genomes]
rs28701160	0.90[AMR][1000 genomes]
rs55956216	0.87[ASN][1000 genomes]
rs58900495	0.81[ASN][1000 genomes]
rs60983251	0.90[AMR][1000 genomes]
rs7144462	0.93[ASN][1000 genomes]
rs7144496	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7146496	0.80[YRI][hapmap]
rs7147361	0.90[AMR][1000 genomes]
rs7147838	0.90[AMR][1000 genomes]
rs7147839	0.90[AMR][1000 genomes]
rs7148019	0.90[AMR][1000 genomes]
rs7152740	0.88[YRI][hapmap]
rs7152900	0.82[YRI][hapmap]
rs7153324	0.92[YRI][hapmap]
rs7154345	0.85[YRI][hapmap]
rs7160338	0.90[AMR][1000 genomes]
rs7161100	1.00[CEU][hapmap]
rs73340185	0.81[ASN][1000 genomes]
rs73340194	0.81[ASN][1000 genomes]
rs73342103	0.81[ASN][1000 genomes]
rs73342108	0.81[ASN][1000 genomes]
rs73342113	0.81[ASN][1000 genomes]
rs73344053	0.87[ASN][1000 genomes]
rs73344084	0.87[ASN][1000 genomes]
rs74064761	0.90[AMR][1000 genomes]
rs74064762	0.90[AMR][1000 genomes]
rs74064776	0.90[AMR][1000 genomes]
rs74064781	0.90[AMR][1000 genomes]
rs74064786	0.90[AMR][1000 genomes]
rs74064794	0.90[AMR][1000 genomes]
rs8010771	0.90[AMR][1000 genomes]
rs8010968	0.88[YRI][hapmap]
rs8015542	0.88[YRI][hapmap]
rs8019256	0.84[YRI][hapmap]
rs8021279	1.00[CEU][hapmap]
rs9323695	0.92[YRI][hapmap]
rs9323696	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv832840	chr14:81270033-81423583	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
3	esv2761847	chr14:81392124-81453137	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
4	nsv456346	chr14:81399692-81448382	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
5	nsv565291	chr14:81399692-81448382	Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81408800-81414200	Weak transcription	Liver	Liver
2	chr14:81408800-81421000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr14:81409000-81414000	Weak transcription	Thymus	Thymus
4	chr14:81409200-81415400	Weak transcription	Placenta	Placenta
5	chr14:81410200-81420000	Weak transcription	Dnd41	blood
6	chr14:81411400-81413600	Enhancers	HMEC	breast
7	chr14:81411800-81416800	Strong transcription	Fetal Thymus	thymus
8	chr14:81412400-81414800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr14:81412600-81415200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr14:81412600-81421000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr14:81413200-81414600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr14:81413200-81414800	Weak transcription	NHEK	skin

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