Variant report

Variant	rs28701160
Chromosome Location	chr14:81457180-81457181
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81456409..81459092-chr14:81684225..81686871,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10133525	0.90[AFR][1000 genomes]
rs10136949	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10138961	0.90[AMR][1000 genomes]
rs10139168	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10141257	0.90[AMR][1000 genomes]
rs10149425	1.00[AMR][1000 genomes]
rs10152059	0.90[AMR][1000 genomes]
rs11844944	0.90[AMR][1000 genomes]
rs11845184	0.90[AMR][1000 genomes]
rs11847561	0.90[AMR][1000 genomes]
rs11847808	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11850795	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11850804	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11850866	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11850934	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28376437	1.00[AMR][1000 genomes]
rs28504619	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28533809	0.90[AMR][1000 genomes]
rs28534062	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28685026	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59265535	0.81[AMR][1000 genomes]
rs60983251	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7144235	0.90[AMR][1000 genomes]
rs7144496	1.00[AMR][1000 genomes]
rs7147361	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7147838	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7147839	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7148019	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7160338	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72693078	0.81[AFR][1000 genomes]
rs74064761	1.00[AMR][1000 genomes]
rs74064762	1.00[AMR][1000 genomes]
rs74064776	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064781	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064786	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064794	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8010771	1.00[AMR][1000 genomes]
rs9323696	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81455400-81463800	Weak transcription	Thymus	Thymus
2	chr14:81455800-81492200	Weak transcription	Fetal Thymus	thymus
3	chr14:81456200-81459400	Weak transcription	Dnd41	blood

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