Variant report

Variant	rs7147839
Chromosome Location	chr14:81447835-81447836
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81447196..81448849-chr14:81635444..81638287,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258999	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10133525	0.90[AFR][1000 genomes]
rs10136949	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10138961	0.90[AMR][1000 genomes]
rs10139168	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10141257	0.90[AMR][1000 genomes]
rs10149425	1.00[AMR][1000 genomes]
rs10152059	0.90[AMR][1000 genomes]
rs11844944	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11845184	0.90[AMR][1000 genomes]
rs11847561	0.90[AMR][1000 genomes]
rs11847808	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11850795	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11850804	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11850866	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11850934	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28376437	1.00[AMR][1000 genomes]
rs28504619	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28533809	0.90[AMR][1000 genomes]
rs28534062	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28685026	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28701160	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59265535	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs60983251	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7144235	0.90[AMR][1000 genomes]
rs7144496	1.00[AMR][1000 genomes]
rs7147361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7147838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7148019	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7160338	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064761	1.00[AMR][1000 genomes]
rs74064762	1.00[AMR][1000 genomes]
rs74064776	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064781	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064786	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74064794	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8010771	1.00[AMR][1000 genomes]
rs9323696	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2761847	chr14:81392124-81453137	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
3	nsv456346	chr14:81399692-81448382	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
4	nsv565291	chr14:81399692-81448382	Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81446000-81448000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr14:81446800-81448000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr14:81447000-81451000	Genic enhancers	Dnd41	blood
4	chr14:81447200-81448200	Enhancers	Fetal Thymus	thymus
5	chr14:81447600-81448000	Enhancers	Colon Smooth Muscle	Colon
6	chr14:81447600-81448600	Enhancers	Thymus	Thymus
7	chr14:81447800-81448000	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
8	chr14:81447800-81448200	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr14:81447800-81448400	Enhancers	Aorta	Aorta
10	chr14:81447800-81448600	Enhancers	Psoas Muscle	Psoas
11	chr14:81447800-81449200	Enhancers	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links