Variant report

Variant	rs10136949
Chromosome Location	chr14:81435961-81435962
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81434370..81436740-chr14:81683438..81686246,2	MCF-7	breast:
2	chr14:81429871..81432242-chr14:81433461..81436310,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10130150	1.00[MEX][hapmap]
rs10130613	1.00[MEX][hapmap]
rs10137669	1.00[MEX][hapmap]
rs10138961	0.90[AMR][1000 genomes]
rs10139039	0.80[YRI][hapmap]
rs10139168	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10139628	1.00[MEX][hapmap]
rs10141192	1.00[MEX][hapmap]
rs10141257	0.90[AMR][1000 genomes]
rs10149425	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs10152059	0.90[AMR][1000 genomes]
rs11844944	0.90[AMR][1000 genomes]
rs11845184	0.90[AMR][1000 genomes]
rs11845772	0.85[YRI][hapmap]
rs11847561	0.90[AMR][1000 genomes]
rs11847808	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11850795	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11850804	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11850866	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11850934	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11851697	1.00[MEX][hapmap]
rs12587252	1.00[MEX][hapmap]
rs28376437	1.00[AMR][1000 genomes]
rs28504619	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28533809	0.90[AMR][1000 genomes]
rs28534062	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28685026	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28701160	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59265535	0.81[AMR][1000 genomes]
rs60983251	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7144235	0.90[AMR][1000 genomes]
rs7144496	1.00[AMR][1000 genomes]
rs7147361	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7147838	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7147839	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7148019	0.91[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7152740	1.00[MEX][hapmap]
rs7160338	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064761	1.00[AMR][1000 genomes]
rs74064762	1.00[AMR][1000 genomes]
rs74064776	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064781	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064786	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064794	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8010771	1.00[AMR][1000 genomes]
rs8010968	1.00[MEX][hapmap]
rs8015542	1.00[MEX][hapmap]
rs9323695	1.00[MEX][hapmap]
rs9323696	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2761847	chr14:81392124-81453137	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
3	nsv456346	chr14:81399692-81448382	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
4	nsv565291	chr14:81399692-81448382	Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81433000-81436200	Genic enhancers	Thymus	Thymus
2	chr14:81434000-81442600	Genic enhancers	Dnd41	blood
3	chr14:81434400-81436400	Strong transcription	Fetal Thymus	thymus

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