Variant report

Variant	rs28685026
Chromosome Location	chr14:81452227-81452228
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10133525	0.92[AFR][1000 genomes]
rs10136949	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10138961	0.90[AMR][1000 genomes]
rs10139168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10141257	0.90[AMR][1000 genomes]
rs10149425	1.00[AMR][1000 genomes]
rs10152059	0.90[AMR][1000 genomes]
rs11844944	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11845184	0.90[AMR][1000 genomes]
rs11847353	1.00[EUR][1000 genomes]
rs11847561	0.90[AMR][1000 genomes]
rs11847606	1.00[EUR][1000 genomes]
rs11847808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11850795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11850804	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11850866	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11850934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11851225	1.00[EUR][1000 genomes]
rs28376437	1.00[AMR][1000 genomes]
rs28410258	1.00[EUR][1000 genomes]
rs28410717	1.00[EUR][1000 genomes]
rs28504619	1.00[AMR][1000 genomes]
rs28533809	0.90[AMR][1000 genomes]
rs28534062	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28701160	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57203954	1.00[EUR][1000 genomes]
rs59265535	0.81[AMR][1000 genomes]
rs60279325	1.00[EUR][1000 genomes]
rs60983251	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6574619	1.00[EUR][1000 genomes]
rs6574620	1.00[EUR][1000 genomes]
rs7144235	0.90[AMR][1000 genomes]
rs7144496	1.00[AMR][1000 genomes]
rs7147361	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7147838	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7147839	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7148019	1.00[AMR][1000 genomes]
rs7152004	1.00[EUR][1000 genomes]
rs7152497	1.00[EUR][1000 genomes]
rs7152976	1.00[EUR][1000 genomes]
rs7159278	1.00[EUR][1000 genomes]
rs7160338	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73349970	1.00[EUR][1000 genomes]
rs74064761	1.00[AMR][1000 genomes]
rs74064762	1.00[AMR][1000 genomes]
rs74064776	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064781	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74064796	0.81[AFR][1000 genomes]
rs8010771	1.00[AMR][1000 genomes]
rs9323696	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2761847	chr14:81392124-81453137	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81448000-81453400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr14:81448000-81453400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr14:81449200-81452600	Enhancers	Thymus	Thymus
4	chr14:81450800-81454400	Enhancers	Fetal Thymus	thymus
5	chr14:81451000-81455400	Enhancers	Dnd41	blood
6	chr14:81451800-81452600	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr14:81452200-81452400	Enhancers	NHDF-Ad	bronchial

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