Variant report

Variant	rs74064776
Chromosome Location	chr14:81429987-81429988
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81429469..81431335-chr14:81685731..81687718,2	K562	blood:
2	chr14:81429871..81432242-chr14:81433461..81436310,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165417	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10133525	0.82[AFR][1000 genomes]
rs10136949	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10138961	0.90[AMR][1000 genomes]
rs10139168	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10141257	0.90[AMR][1000 genomes]
rs10149425	1.00[AMR][1000 genomes]
rs10152059	0.90[AMR][1000 genomes]
rs11844944	0.90[AMR][1000 genomes]
rs11845184	0.90[AMR][1000 genomes]
rs11847561	0.90[AMR][1000 genomes]
rs11847808	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11850795	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11850804	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11850866	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11850934	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28376437	1.00[AMR][1000 genomes]
rs28504619	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28533809	0.90[AMR][1000 genomes]
rs28534062	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28685026	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28701160	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59265535	0.81[AMR][1000 genomes]
rs60983251	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7144235	0.90[AMR][1000 genomes]
rs7144496	1.00[AMR][1000 genomes]
rs7147361	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7147838	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7147839	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7148019	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7160338	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064761	1.00[AMR][1000 genomes]
rs74064762	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064781	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064786	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064794	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8010771	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9323696	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2761847	chr14:81392124-81453137	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
3	nsv456346	chr14:81399692-81448382	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
4	nsv565291	chr14:81399692-81448382	Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81427600-81431800	Genic enhancers	Dnd41	blood
2	chr14:81429000-81432600	Weak transcription	Fetal Thymus	thymus
3	chr14:81429200-81430000	Weak transcription	Thymus	Thymus

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