Variant report

Variant	rs7160338
Chromosome Location	chr14:81442842-81442843
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10133525	0.84[AFR][1000 genomes]
rs10136949	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10138961	0.90[AMR][1000 genomes]
rs10139168	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10141257	0.90[AMR][1000 genomes]
rs10149425	1.00[AMR][1000 genomes]
rs10152059	0.90[AMR][1000 genomes]
rs11844944	0.90[AMR][1000 genomes]
rs11845184	0.90[AMR][1000 genomes]
rs11847561	0.90[AMR][1000 genomes]
rs11847808	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11850795	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11850804	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11850866	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11850934	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28376437	1.00[AMR][1000 genomes]
rs28504619	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28533809	0.90[AMR][1000 genomes]
rs28534062	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28685026	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28701160	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5002906	0.82[YRI][hapmap]
rs59265535	0.81[AMR][1000 genomes]
rs60983251	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7144235	0.90[AMR][1000 genomes]
rs7144496	1.00[AMR][1000 genomes]
rs7147361	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7147838	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7147839	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7148019	0.92[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064761	1.00[AMR][1000 genomes]
rs74064762	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064776	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064781	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064786	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064794	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8010771	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9323696	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2761847	chr14:81392124-81453137	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
3	nsv456346	chr14:81399692-81448382	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
4	nsv565291	chr14:81399692-81448382	Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81440000-81443200	Enhancers	Adipose Nuclei	Adipose
2	chr14:81440600-81443800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr14:81440600-81444200	Enhancers	Placenta Amnion	Placenta Amnion
4	chr14:81440600-81444600	Weak transcription	Primary T cells from cord blood	blood
5	chr14:81440800-81444600	Weak transcription	Fetal Muscle Leg	muscle
6	chr14:81441000-81443800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr14:81441400-81444400	Enhancers	Fetal Thymus	thymus
8	chr14:81441800-81444000	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr14:81442000-81443000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr14:81442000-81443600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr14:81442000-81444200	Weak transcription	Fetal Brain Male	brain
12	chr14:81442000-81446000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr14:81442200-81444400	Weak transcription	Brain Germinal Matrix	brain
14	chr14:81442200-81444800	Weak transcription	Brain Anterior Caudate	brain
15	chr14:81442200-81446200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr14:81442200-81447600	Weak transcription	Colon Smooth Muscle	Colon
17	chr14:81442600-81443400	Genic enhancers	Thymus	Thymus
18	chr14:81442600-81443600	Transcr. at gene 5' and 3'	Dnd41	blood
19	chr14:81442800-81444800	Enhancers	Placenta	Placenta

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