Variant report

Variant	rs28504619
Chromosome Location	chr14:81425675-81425676
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81420793..81423189-chr14:81424553..81427836,4	MCF-7	breast:
2	chr14:81421283..81423197-chr14:81423259..81426025,2	K562	blood:

Variant related genes	Relation type
ENSG00000165409	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10136949	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10138961	0.90[AMR][1000 genomes]
rs10139168	1.00[AMR][1000 genomes]
rs10141257	0.90[AMR][1000 genomes]
rs10149425	1.00[AMR][1000 genomes]
rs10152059	0.90[AMR][1000 genomes]
rs11844944	0.90[AMR][1000 genomes]
rs11845184	0.90[AMR][1000 genomes]
rs11847561	0.90[AMR][1000 genomes]
rs11847808	1.00[AMR][1000 genomes]
rs11850795	1.00[AMR][1000 genomes]
rs11850804	1.00[AMR][1000 genomes]
rs11850866	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11850934	1.00[AMR][1000 genomes]
rs28376437	1.00[AMR][1000 genomes]
rs28533809	0.90[AMR][1000 genomes]
rs28534062	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28685026	1.00[AMR][1000 genomes]
rs28701160	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59265535	0.81[AMR][1000 genomes]
rs60983251	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7144235	0.90[AMR][1000 genomes]
rs7144496	1.00[AMR][1000 genomes]
rs7147361	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7147838	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7147839	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7148019	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7160338	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064761	1.00[AMR][1000 genomes]
rs74064762	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064776	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064781	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064786	1.00[AMR][1000 genomes]
rs74064794	1.00[AMR][1000 genomes]
rs8010771	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9323696	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2761847	chr14:81392124-81453137	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
3	nsv456346	chr14:81399692-81448382	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
4	nsv565291	chr14:81399692-81448382	Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81421000-81426400	Active TSS	Thymus	Thymus
2	chr14:81422000-81425800	Weak transcription	Brain Angular Gyrus	brain
3	chr14:81422200-81425800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr14:81422200-81425800	Weak transcription	Brain Substantia Nigra	brain
5	chr14:81422200-81426600	Weak transcription	Spleen	Spleen
6	chr14:81422200-81427200	Weak transcription	Right Ventricle	heart
7	chr14:81422400-81425800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr14:81422400-81425800	Weak transcription	Brain Anterior Caudate	brain
9	chr14:81423200-81427600	Enhancers	Primary B cells from peripheral blood	blood
10	chr14:81423600-81425800	Weak transcription	Adipose Nuclei	Adipose
11	chr14:81423800-81426600	Active TSS	Fetal Thymus	thymus
12	chr14:81424400-81425800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr14:81424800-81426600	Flanking Active TSS	Primary T cells from cord blood	blood
14	chr14:81424800-81427200	Flanking Active TSS	Dnd41	blood
15	chr14:81425000-81425800	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr14:81425200-81425800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr14:81425200-81426800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr14:81425400-81425800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr14:81425400-81425800	Enhancers	Brain Germinal Matrix	brain
20	chr14:81425400-81425800	Enhancers	Brain Hippocampus Middle	brain
21	chr14:81425400-81426000	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr14:81425400-81426000	Enhancers	Primary B cells from cord blood	blood
23	chr14:81425400-81426200	Enhancers	Psoas Muscle	Psoas
24	chr14:81425400-81426400	Flanking Active TSS	GM12878-XiMat	blood
25	chr14:81425400-81426600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
26	chr14:81425400-81426600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
27	chr14:81425400-81426800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
28	chr14:81425400-81426800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
29	chr14:81425400-81426800	Enhancers	Fetal Brain Male	brain
30	chr14:81425400-81426800	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr14:81425600-81425800	Enhancers	Liver	Liver
32	chr14:81425600-81426000	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr14:81425600-81426200	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
34	chr14:81425600-81426200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
35	chr14:81425600-81426400	Active TSS	Primary T cells fromperipheralblood	blood
36	chr14:81425600-81426400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
37	chr14:81425600-81427800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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