Variant report

Variant	rs11844944
Chromosome Location	chr14:81459757-81459758
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81459039..81460953-chr14:81635224..81637518,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258999	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10136949	0.90[AMR][1000 genomes]
rs10138961	0.80[AMR][1000 genomes]
rs10139168	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10141257	0.80[AMR][1000 genomes]
rs10149425	0.90[AMR][1000 genomes]
rs10152059	0.80[AMR][1000 genomes]
rs11845184	0.80[AMR][1000 genomes]
rs11847561	0.80[AMR][1000 genomes]
rs11847808	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11850795	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11850804	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11850866	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11850934	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11851120	1.00[EUR][1000 genomes]
rs13379243	1.00[EUR][1000 genomes]
rs17111361	0.82[AFR][1000 genomes]
rs28376437	0.90[AMR][1000 genomes]
rs28504619	0.90[AMR][1000 genomes]
rs28533809	0.80[AMR][1000 genomes]
rs28534062	0.90[AMR][1000 genomes]
rs28685026	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs28701160	0.90[AMR][1000 genomes]
rs28750114	1.00[EUR][1000 genomes]
rs60983251	0.90[AMR][1000 genomes]
rs7144235	0.80[AMR][1000 genomes]
rs7144496	0.90[AMR][1000 genomes]
rs7147361	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7147838	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7147839	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7148019	0.90[AMR][1000 genomes]
rs7160338	0.90[AMR][1000 genomes]
rs73347926	1.00[EUR][1000 genomes]
rs73347933	1.00[EUR][1000 genomes]
rs73347935	1.00[EUR][1000 genomes]
rs73347938	1.00[EUR][1000 genomes]
rs73347947	1.00[EUR][1000 genomes]
rs73347973	1.00[EUR][1000 genomes]
rs73349940	1.00[EUR][1000 genomes]
rs74064761	0.90[AMR][1000 genomes]
rs74064762	0.90[AMR][1000 genomes]
rs74064776	0.90[AMR][1000 genomes]
rs74064781	0.90[AMR][1000 genomes]
rs74064786	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs74064794	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs8007755	1.00[EUR][1000 genomes]
rs8008523	1.00[EUR][1000 genomes]
rs8010771	0.90[AMR][1000 genomes]
rs8012937	1.00[EUR][1000 genomes]
rs8013119	1.00[EUR][1000 genomes]
rs9323696	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81455400-81463800	Weak transcription	Thymus	Thymus
2	chr14:81455800-81492200	Weak transcription	Fetal Thymus	thymus
3	chr14:81459400-81459800	Enhancers	Liver	Liver
4	chr14:81459400-81465600	Strong transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links