Variant report

Variant	rs17111361
Chromosome Location	chr14:81457406-81457407
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11844944	0.82[AFR][1000 genomes]
rs12184983	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12880945	0.81[EUR][1000 genomes]
rs12881268	0.81[EUR][1000 genomes]
rs12883673	0.81[EUR][1000 genomes]
rs12890676	0.81[EUR][1000 genomes]
rs34074777	0.81[EUR][1000 genomes]
rs34277709	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35336887	0.81[EUR][1000 genomes]
rs35523135	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35554250	0.81[EUR][1000 genomes]
rs36093037	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71416856	0.81[EUR][1000 genomes]
rs8009058	1.00[JPT][hapmap]
rs8022139	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81455400-81463800	Weak transcription	Thymus	Thymus
2	chr14:81455800-81492200	Weak transcription	Fetal Thymus	thymus
3	chr14:81456200-81459400	Weak transcription	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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