Variant report

Variant	rs12184983
Chromosome Location	chr14:81462556-81462557
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12880945	0.83[EUR][1000 genomes]
rs12881268	0.83[EUR][1000 genomes]
rs12883673	0.83[EUR][1000 genomes]
rs12890676	0.83[EUR][1000 genomes]
rs17111361	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34074777	0.83[EUR][1000 genomes]
rs34277709	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35336887	0.83[EUR][1000 genomes]
rs35523135	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35554250	0.83[EUR][1000 genomes]
rs35789100	0.81[EUR][1000 genomes]
rs36093037	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71416856	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81455400-81463800	Weak transcription	Thymus	Thymus
2	chr14:81455800-81492200	Weak transcription	Fetal Thymus	thymus
3	chr14:81459400-81465600	Strong transcription	Dnd41	blood
4	chr14:81460600-81462600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr14:81462400-81462600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr14:81462400-81462600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr14:81462400-81462600	Enhancers	Liver	Liver
8	chr14:81462400-81462600	Bivalent Enhancer	A549	lung
9	chr14:81462400-81462800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr14:81462400-81462800	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr14:81462400-81463000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr14:81462400-81463000	Enhancers	Muscle Satellite Cultured Cells	--
13	chr14:81462400-81463000	Bivalent Enhancer	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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