Variant report

Variant	rs10152059
Chromosome Location	chr14:81486709-81486710
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10133525	0.90[AMR][1000 genomes]
rs10136949	0.90[AMR][1000 genomes]
rs10138961	1.00[AMR][1000 genomes]
rs10139168	0.90[AMR][1000 genomes]
rs10141257	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10149425	0.90[AMR][1000 genomes]
rs10150439	0.90[AMR][1000 genomes]
rs11844944	0.80[AMR][1000 genomes]
rs11845184	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11847561	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11847808	0.90[AMR][1000 genomes]
rs11850795	0.90[AMR][1000 genomes]
rs11850804	0.90[AMR][1000 genomes]
rs11850866	0.90[AMR][1000 genomes]
rs11850934	0.90[AMR][1000 genomes]
rs28376437	0.90[AMR][1000 genomes]
rs28504619	0.90[AMR][1000 genomes]
rs28533809	1.00[AMR][1000 genomes]
rs28534062	0.90[AMR][1000 genomes]
rs28685026	0.90[AMR][1000 genomes]
rs28701160	0.90[AMR][1000 genomes]
rs59265535	0.91[AMR][1000 genomes]
rs60983251	0.90[AMR][1000 genomes]
rs7144235	0.80[AMR][1000 genomes]
rs7144496	0.90[AMR][1000 genomes]
rs7147361	0.90[AMR][1000 genomes]
rs7147838	0.90[AMR][1000 genomes]
rs7147839	0.90[AMR][1000 genomes]
rs7148019	0.90[AMR][1000 genomes]
rs7160338	0.90[AMR][1000 genomes]
rs74064761	0.90[AMR][1000 genomes]
rs74064762	0.90[AMR][1000 genomes]
rs74064776	0.90[AMR][1000 genomes]
rs74064781	0.90[AMR][1000 genomes]
rs74064786	0.90[AMR][1000 genomes]
rs74064794	0.90[AMR][1000 genomes]
rs8010771	0.90[AMR][1000 genomes]
rs9323696	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1052999	chr14:81468860-81599074	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv542144	chr14:81468860-81599074	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81455800-81492200	Weak transcription	Fetal Thymus	thymus
2	chr14:81482600-81487000	Strong transcription	Dnd41	blood
3	chr14:81484600-81502400	Weak transcription	Liver	Liver
4	chr14:81485800-81486800	Weak transcription	K562	blood
5	chr14:81486600-81486800	Genic enhancers	Thymus	Thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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