Variant report

Variant	rs28410258
Chromosome Location	chr14:81476828-81476829
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:81472830..81475161-chr14:81475745..81477749,2	MCF-7	breast:
2	chr14:81476596..81478510-chr14:81478665..81481342,2	K562	blood:
3	chr14:81468835..81472649-chr14:81474348..81477215,3	K562	blood:

Variant related genes	Relation type
ENSG00000271656	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10131915	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs10483973	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs11847353	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11847606	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11847808	1.00[EUR][1000 genomes]
rs11850795	1.00[EUR][1000 genomes]
rs11850804	1.00[EUR][1000 genomes]
rs11850866	1.00[EUR][1000 genomes]
rs11850934	1.00[EUR][1000 genomes]
rs11851120	0.83[AMR][1000 genomes]
rs11851225	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13379243	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs13379251	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs28410717	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28685026	1.00[EUR][1000 genomes]
rs28750114	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs34331892	0.88[AMR][1000 genomes]
rs57203954	1.00[EUR][1000 genomes]
rs60279325	1.00[EUR][1000 genomes]
rs6574619	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6574620	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7152004	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7152497	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7152976	1.00[EUR][1000 genomes]
rs7154960	0.94[AMR][1000 genomes]
rs7159278	1.00[EUR][1000 genomes]
rs73349940	0.89[AMR][1000 genomes]
rs73349970	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74064794	1.00[EUR][1000 genomes]
rs8007755	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs8008523	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs8012937	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs8013119	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs8023193	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1052999	chr14:81468860-81599074	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv542144	chr14:81468860-81599074	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81455800-81492200	Weak transcription	Fetal Thymus	thymus
2	chr14:81468000-81486600	Weak transcription	Thymus	Thymus
3	chr14:81470400-81477200	Weak transcription	Dnd41	blood
4	chr14:81476400-81477200	Weak transcription	K562	blood

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