Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81486385..81489423-chr14:81489812..81494340,5	K562	blood:

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10130066	0.81[AMR][1000 genomes]
rs10131915	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10483973	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11847353	0.87[AMR][1000 genomes]
rs11847606	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11851120	0.82[AMR][1000 genomes]
rs11851225	0.94[AMR][1000 genomes]
rs13379243	0.88[AMR][1000 genomes]
rs13379251	0.88[AMR][1000 genomes]
rs17111397	1.00[ASN][1000 genomes]
rs2371465	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28410258	0.88[AMR][1000 genomes]
rs28410717	0.94[AMR][1000 genomes]
rs28665858	0.81[AMR][1000 genomes]
rs28750114	0.88[AMR][1000 genomes]
rs4403990	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4617779	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574619	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6574620	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7152004	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7152497	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7154960	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7161100	0.81[AMR][1000 genomes]
rs73349940	0.88[AMR][1000 genomes]
rs73349970	0.94[AMR][1000 genomes]
rs74064825	0.81[AMR][1000 genomes]
rs8007755	0.88[AMR][1000 genomes]
rs8008523	0.88[AMR][1000 genomes]
rs8012937	0.88[AMR][1000 genomes]
rs8013119	0.88[AMR][1000 genomes]
rs8023193	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1052999	chr14:81468860-81599074	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv542144	chr14:81468860-81599074	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81455800-81492200	Weak transcription	Fetal Thymus	thymus
2	chr14:81482600-81487000	Strong transcription	Dnd41	blood
3	chr14:81484600-81502400	Weak transcription	Liver	Liver
4	chr14:81485800-81486800	Weak transcription	K562	blood
5	chr14:81486600-81486800	Genic enhancers	Thymus	Thymus

Quick Search: