Variant report

Variant	rs10130066
Chromosome Location	chr14:81495601-81495602
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10483973	0.81[AMR][1000 genomes]
rs11847606	0.81[AMR][1000 genomes]
rs28665858	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34331892	0.81[AMR][1000 genomes]
rs6574619	0.81[AMR][1000 genomes]
rs6574620	0.81[AMR][1000 genomes]
rs7152004	0.81[AMR][1000 genomes]
rs7152497	0.81[AMR][1000 genomes]
rs7161100	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064825	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8021279	1.00[CEU][hapmap]
rs8023193	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1052999	chr14:81468860-81599074	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv542144	chr14:81468860-81599074	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81484600-81502400	Weak transcription	Liver	Liver
2	chr14:81487000-81498600	Weak transcription	Thymus	Thymus
3	chr14:81492800-81499000	Weak transcription	Fetal Thymus	thymus
4	chr14:81494800-81496000	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr14:81495000-81500000	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr14:81495200-81498000	Weak transcription	Dnd41	blood
7	chr14:81495600-81495800	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr14:81495600-81497600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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