Variant report

Variant	rs13379251
Chromosome Location	chr14:81472909-81472910
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10131915	0.83[AMR][1000 genomes]
rs10483973	0.88[AMR][1000 genomes]
rs11847353	0.88[AMR][1000 genomes]
rs11847606	0.88[AMR][1000 genomes]
rs11851120	0.94[AMR][1000 genomes]
rs11851225	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs13379243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28410258	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs28410717	0.94[AMR][1000 genomes]
rs28750114	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34331892	0.88[AMR][1000 genomes]
rs6574619	0.88[AMR][1000 genomes]
rs6574620	0.88[AMR][1000 genomes]
rs7152004	0.88[AMR][1000 genomes]
rs7152497	0.88[AMR][1000 genomes]
rs7154960	0.94[AMR][1000 genomes]
rs73349940	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73349970	0.94[AMR][1000 genomes]
rs8007755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8008523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8012937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8013119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8023193	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1052999	chr14:81468860-81599074	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv542144	chr14:81468860-81599074	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81455800-81492200	Weak transcription	Fetal Thymus	thymus
2	chr14:81468000-81486600	Weak transcription	Thymus	Thymus
3	chr14:81470400-81477200	Weak transcription	Dnd41	blood
4	chr14:81470800-81474800	Enhancers	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links