Variant report

Variant	rs72693078
Chromosome Location	chr14:81453113-81453114
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81420764..81421641-chr14:81452541..81453280,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165409	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11845052	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11850464	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11850866	0.83[AFR][1000 genomes]
rs12050078	0.96[EUR][1000 genomes]
rs12050350	0.96[EUR][1000 genomes]
rs12437005	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12896769	0.90[ASN][1000 genomes]
rs17544968	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17545038	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17545310	0.88[ASN][1000 genomes]
rs179243	0.80[ASN][1000 genomes]
rs179245	0.80[ASN][1000 genomes]
rs179249	0.92[ASN][1000 genomes]
rs179251	0.92[ASN][1000 genomes]
rs179254	0.86[ASN][1000 genomes]
rs179257	0.94[ASN][1000 genomes]
rs1990597	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2024427	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2110696	0.91[ASN][1000 genomes]
rs2239610	0.87[EUR][1000 genomes]
rs2268452	0.87[EUR][1000 genomes]
rs2268457	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2268458	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2268460	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2284718	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2284719	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2284720	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2284722	0.93[ASN][1000 genomes]
rs2284727	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28701160	0.81[AFR][1000 genomes]
rs35472552	0.81[ASN][1000 genomes]
rs3783945	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3783951	0.94[ASN][1000 genomes]
rs4903958	0.94[ASN][1000 genomes]
rs4903959	0.94[ASN][1000 genomes]
rs5002906	0.93[ASN][1000 genomes]
rs55751898	0.87[EUR][1000 genomes]
rs55945219	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59431750	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59711583	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs724169	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72693057	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72693068	0.93[ASN][1000 genomes]
rs72693069	0.93[ASN][1000 genomes]
rs72693070	0.93[ASN][1000 genomes]
rs72693072	0.93[ASN][1000 genomes]
rs72693073	0.93[ASN][1000 genomes]
rs72693075	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72693080	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72693090	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72693093	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72693096	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72695026	0.81[ASN][1000 genomes]
rs74064796	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs917985	0.91[ASN][1000 genomes]
rs929630	0.90[ASN][1000 genomes]
rs9323696	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2761847	chr14:81392124-81453137	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81448000-81453400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr14:81448000-81453400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr14:81450800-81454400	Enhancers	Fetal Thymus	thymus
4	chr14:81451000-81455400	Enhancers	Dnd41	blood
5	chr14:81452600-81454600	Weak transcription	Thymus	Thymus
6	chr14:81453000-81453600	Enhancers	NHDF-Ad	bronchial

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