Variant report

Variant	rs3783951
Chromosome Location	chr14:81448096-81448097
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81447196..81448849-chr14:81635444..81638287,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258999	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11845052	0.93[ASN][1000 genomes]
rs11850464	0.93[ASN][1000 genomes]
rs12050078	0.88[CHB][hapmap]
rs12050350	0.88[CHB][hapmap]
rs12050416	0.80[JPT][hapmap]
rs12437005	0.87[ASN][1000 genomes]
rs12896769	0.88[ASN][1000 genomes]
rs17544968	0.93[ASN][1000 genomes]
rs17545038	0.93[ASN][1000 genomes]
rs17545310	0.86[ASN][1000 genomes]
rs179243	0.88[CHB][hapmap]
rs179249	0.90[ASN][1000 genomes]
rs179251	0.90[ASN][1000 genomes]
rs179254	0.84[ASN][1000 genomes]
rs179257	0.92[ASN][1000 genomes]
rs1990597	0.92[ASN][1000 genomes]
rs2024427	0.94[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs2110696	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2268457	0.92[ASN][1000 genomes]
rs2268458	0.89[CHB][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs2268460	0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs2284718	0.91[ASN][1000 genomes]
rs2284719	0.91[ASN][1000 genomes]
rs2284720	0.94[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs2284722	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2284727	0.94[ASN][1000 genomes]
rs2556607	0.80[JPT][hapmap]
rs28850656	0.80[JPT][hapmap]
rs3783945	0.96[ASN][1000 genomes]
rs4903957	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4903958	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4903959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5002906	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55945219	0.93[ASN][1000 genomes]
rs59431750	0.94[ASN][1000 genomes]
rs59711583	0.95[ASN][1000 genomes]
rs6574609	0.80[JPT][hapmap]
rs724169	0.93[ASN][1000 genomes]
rs726020	0.88[CHB][hapmap]
rs72693057	0.91[ASN][1000 genomes]
rs72693068	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72693069	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72693070	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72693072	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72693073	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72693075	0.95[ASN][1000 genomes]
rs72693078	0.94[ASN][1000 genomes]
rs72693080	0.94[ASN][1000 genomes]
rs72693090	0.93[ASN][1000 genomes]
rs72693093	0.92[ASN][1000 genomes]
rs72693096	0.93[ASN][1000 genomes]
rs74064796	0.95[ASN][1000 genomes]
rs768359	0.80[JPT][hapmap]
rs917985	0.85[ASN][1000 genomes]
rs929630	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2761847	chr14:81392124-81453137	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
3	nsv456346	chr14:81399692-81448382	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
4	nsv565291	chr14:81399692-81448382	Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81447000-81451000	Genic enhancers	Dnd41	blood
2	chr14:81447200-81448200	Enhancers	Fetal Thymus	thymus
3	chr14:81447600-81448600	Enhancers	Thymus	Thymus
4	chr14:81447800-81448200	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr14:81447800-81448400	Enhancers	Aorta	Aorta
6	chr14:81447800-81448600	Enhancers	Psoas Muscle	Psoas
7	chr14:81447800-81449200	Enhancers	Placenta	Placenta
8	chr14:81448000-81453400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr14:81448000-81453400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links