Variant report

Variant	rs2268460
Chromosome Location	chr14:81463536-81463537
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81462591..81463541-chr14:81528802..81529444,3	MCF-7	breast:
2	chr14:81461329..81464418-chr14:81684245..81687408,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165417	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs11845052	0.94[ASN][1000 genomes]
rs11850464	0.92[ASN][1000 genomes]
rs12050078	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs12050151	0.81[JPT][hapmap]
rs12050350	0.83[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap]
rs12050416	0.80[JPT][hapmap]
rs12437005	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12896769	0.97[ASN][1000 genomes]
rs17111237	0.81[JPT][hapmap]
rs17111246	0.81[JPT][hapmap]
rs17544968	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17545038	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17545310	0.95[ASN][1000 genomes]
rs179243	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs179249	0.89[ASN][1000 genomes]
rs179251	0.89[ASN][1000 genomes]
rs179254	0.83[ASN][1000 genomes]
rs179257	0.91[ASN][1000 genomes]
rs1990597	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2024427	0.85[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2110696	0.84[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs2268457	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2268458	0.85[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2284718	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2284719	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2284720	0.85[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2284722	0.82[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs2284727	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2300521	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2556607	0.80[JPT][hapmap]
rs28850656	0.80[JPT][hapmap]
rs35472552	0.86[ASN][1000 genomes]
rs3783945	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3783951	0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs4903957	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs4903958	0.82[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs4903959	0.87[ASN][1000 genomes]
rs5002906	0.83[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs55945219	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59431750	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59711583	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6574609	0.80[JPT][hapmap]
rs724169	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs726020	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs72689904	0.84[ASN][1000 genomes]
rs72693057	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72693068	0.88[ASN][1000 genomes]
rs72693069	0.88[ASN][1000 genomes]
rs72693070	0.88[ASN][1000 genomes]
rs72693072	0.88[ASN][1000 genomes]
rs72693073	0.88[ASN][1000 genomes]
rs72693075	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72693078	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72693080	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72693090	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs72693093	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72693096	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs72695026	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs74064796	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs768359	0.80[JPT][hapmap]
rs917985	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs929630	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81455400-81463800	Weak transcription	Thymus	Thymus
2	chr14:81455800-81492200	Weak transcription	Fetal Thymus	thymus
3	chr14:81459400-81465600	Strong transcription	Dnd41	blood
4	chr14:81463000-81467200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr14:81463200-81464000	Enhancers	Psoas Muscle	Psoas
6	chr14:81463200-81464400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr14:81463200-81464600	Weak transcription	Adipose Nuclei	Adipose
8	chr14:81463200-81465200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr14:81463200-81469000	Weak transcription	K562	blood

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