Variant report

Variant	rs72693090
Chromosome Location	chr14:81459753-81459754
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81459039..81460953-chr14:81635224..81637518,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258999	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11845052	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11850464	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12050078	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12050350	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12437005	0.94[ASN][1000 genomes]
rs12896769	0.91[ASN][1000 genomes]
rs17544968	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17545038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17545310	0.89[ASN][1000 genomes]
rs179243	0.81[ASN][1000 genomes]
rs179245	0.81[ASN][1000 genomes]
rs179249	0.93[ASN][1000 genomes]
rs179251	0.93[ASN][1000 genomes]
rs179254	0.87[ASN][1000 genomes]
rs179257	0.95[ASN][1000 genomes]
rs1990597	0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2024427	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2110696	0.92[ASN][1000 genomes]
rs2239610	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2268452	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2268457	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2268458	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2268460	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2284718	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2284719	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2284720	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2284722	0.94[ASN][1000 genomes]
rs2284727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3783945	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3783951	0.93[ASN][1000 genomes]
rs4903958	0.93[ASN][1000 genomes]
rs4903959	0.93[ASN][1000 genomes]
rs5002906	0.94[ASN][1000 genomes]
rs55751898	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55945219	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59431750	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59711583	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs724169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs726018	0.80[ASN][1000 genomes]
rs726020	0.80[ASN][1000 genomes]
rs72693057	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72693068	0.94[ASN][1000 genomes]
rs72693069	0.94[ASN][1000 genomes]
rs72693070	0.94[ASN][1000 genomes]
rs72693072	0.94[ASN][1000 genomes]
rs72693073	0.94[ASN][1000 genomes]
rs72693075	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72693078	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72693080	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72693093	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72693096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72695026	0.82[ASN][1000 genomes]
rs74064796	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs917985	0.92[ASN][1000 genomes]
rs929630	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81455400-81463800	Weak transcription	Thymus	Thymus
2	chr14:81455800-81492200	Weak transcription	Fetal Thymus	thymus
3	chr14:81459400-81459800	Enhancers	Liver	Liver
4	chr14:81459400-81465600	Strong transcription	Dnd41	blood

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