Variant report

Variant	rs11850464
Chromosome Location	chr14:81439462-81439463
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81437706..81439686-chr14:81442892..81444755,2	MCF-7	breast:
2	chr14:81432696..81434242-chr14:81439337..81441996,2	MCF-7	breast:

Extended variants
information (count: 82 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10133213	0.80[YRI][hapmap]
rs10139039	0.82[YRI][hapmap]
rs10149689	0.83[CHB][hapmap]
rs11845052	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11845772	0.86[YRI][hapmap]
rs12050077	0.83[CHB][hapmap]
rs12050078	0.90[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12050151	0.81[JPT][hapmap]
rs12050278	0.84[CHB][hapmap]
rs12050350	0.90[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12050416	0.80[JPT][hapmap]
rs12437005	0.92[ASN][1000 genomes]
rs12896769	0.89[ASN][1000 genomes]
rs17111237	0.81[JPT][hapmap]
rs17111246	0.81[JPT][hapmap]
rs17544968	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17545038	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17545310	0.87[ASN][1000 genomes]
rs179243	0.94[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs179245	0.85[ASN][1000 genomes]
rs179249	0.97[ASN][1000 genomes]
rs179251	0.97[ASN][1000 genomes]
rs179254	0.91[ASN][1000 genomes]
rs179257	0.99[ASN][1000 genomes]
rs1990597	0.95[ASN][1000 genomes]
rs2024427	0.95[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2110696	1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs2114705	0.84[CHB][hapmap]
rs2195103	0.83[CHB][hapmap]
rs2217177	0.83[CHB][hapmap]
rs2217178	0.84[CHB][hapmap]
rs2239610	0.90[CEU][hapmap];0.84[CHB][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2268451	0.83[CHB][hapmap]
rs2268452	0.90[CEU][hapmap];0.84[CHB][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2268457	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2268458	0.95[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2268460	0.81[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2284718	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2284719	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2284720	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2284722	0.94[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs2284727	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2556607	0.80[JPT][hapmap]
rs28850656	0.80[JPT][hapmap]
rs3783945	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3783951	0.94[CHB][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs4903957	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs4903958	0.94[CHB][hapmap];0.87[JPT][hapmap];0.93[ASN][1000 genomes]
rs4903959	0.93[ASN][1000 genomes]
rs5002906	0.94[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];0.94[ASN][1000 genomes]
rs55751898	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55945219	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59431750	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59711583	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6574609	0.80[JPT][hapmap]
rs7148019	0.96[YRI][hapmap]
rs7152740	0.80[YRI][hapmap]
rs7154269	0.83[CHB][hapmap]
rs724169	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs726018	0.84[ASN][1000 genomes]
rs726020	0.94[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs72693057	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72693068	0.94[ASN][1000 genomes]
rs72693069	0.94[ASN][1000 genomes]
rs72693070	0.94[ASN][1000 genomes]
rs72693072	0.94[ASN][1000 genomes]
rs72693073	0.94[ASN][1000 genomes]
rs72693075	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72693078	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72693080	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72693090	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72693093	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72693096	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74064796	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs768359	0.80[JPT][hapmap]
rs8022600	0.82[CHB][hapmap]
rs917985	0.90[ASN][1000 genomes]
rs929630	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2761847	chr14:81392124-81453137	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
3	nsv456346	chr14:81399692-81448382	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
4	nsv565291	chr14:81399692-81448382	Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11850464	TSHR,BHLHB9	cis	brain	BrainEAC

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81434000-81442600	Genic enhancers	Dnd41	blood
2	chr14:81436200-81440200	Enhancers	Thymus	Thymus
3	chr14:81436600-81440400	Enhancers	Fetal Thymus	thymus
4	chr14:81438400-81439800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr14:81438800-81440200	Weak transcription	Fetal Brain Female	brain
6	chr14:81438800-81442000	Enhancers	Fetal Brain Male	brain
7	chr14:81439000-81440600	Enhancers	Primary T cells from cord blood	blood
8	chr14:81439000-81442200	Enhancers	Brain Germinal Matrix	brain
9	chr14:81439000-81442400	Enhancers	Placenta	Placenta
10	chr14:81439200-81442000	Enhancers	Rectal Smooth Muscle	rectum
11	chr14:81439400-81439800	Enhancers	Fetal Muscle Trunk	muscle
12	chr14:81439400-81440000	Weak transcription	Adipose Nuclei	Adipose

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