Variant report

Variant	rs2268458
Chromosome Location	chr14:81462895-81462896
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:81453560..81454332-chr14:81462475..81463099,2	MCF-7	breast:
2	chr14:81462345..81463310-chr14:81528942..81529784,4	MCF-7	breast:
3	chr14:81462289..81463361-chr14:81629649..81631060,10	MCF-7	breast:
4	chr14:81462591..81463541-chr14:81528802..81529444,3	MCF-7	breast:
5	chr14:81462542..81463148-chr14:81629279..81630008,2	K562	blood:
6	chr14:81461329..81464418-chr14:81684245..81687408,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165417	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs11845052	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11850464	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12050078	0.95[CEU][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes]
rs12050151	0.81[JPT][hapmap]
rs12050350	0.95[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12050416	0.80[JPT][hapmap]
rs12437005	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12896769	0.92[ASN][1000 genomes]
rs17111237	0.81[JPT][hapmap]
rs17111246	0.81[JPT][hapmap]
rs17544968	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17545038	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17545310	0.90[ASN][1000 genomes]
rs179243	0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs179245	0.80[ASN][1000 genomes]
rs179249	0.92[ASN][1000 genomes]
rs179251	0.92[ASN][1000 genomes]
rs179254	0.86[ASN][1000 genomes]
rs179257	0.94[ASN][1000 genomes]
rs1990597	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2024427	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2110696	0.83[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs2239610	0.95[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2268452	0.95[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2268457	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2268460	0.85[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2284718	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2284719	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2284720	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2284722	0.88[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs2284727	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2300521	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2556607	0.80[JPT][hapmap]
rs28850656	0.80[JPT][hapmap]
rs35472552	0.81[ASN][1000 genomes]
rs3783945	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3783951	0.89[CHB][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs4903957	0.88[CHB][hapmap];0.87[JPT][hapmap]
rs4903958	0.88[CHB][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs4903959	0.92[ASN][1000 genomes]
rs5002906	0.88[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs55751898	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55945219	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59431750	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59711583	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6574609	0.80[JPT][hapmap]
rs724169	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs726020	0.87[JPT][hapmap]
rs72693057	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72693068	0.93[ASN][1000 genomes]
rs72693069	0.93[ASN][1000 genomes]
rs72693070	0.93[ASN][1000 genomes]
rs72693072	0.93[ASN][1000 genomes]
rs72693073	0.93[ASN][1000 genomes]
rs72693075	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72693078	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72693080	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72693090	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72693093	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72693096	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72695026	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs74064796	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs768359	0.80[JPT][hapmap]
rs917985	0.93[ASN][1000 genomes]
rs929630	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81455400-81463800	Weak transcription	Thymus	Thymus
2	chr14:81455800-81492200	Weak transcription	Fetal Thymus	thymus
3	chr14:81459400-81465600	Strong transcription	Dnd41	blood
4	chr14:81462400-81463000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr14:81462400-81463000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr14:81462400-81463000	Bivalent Enhancer	Osteobl	bone
7	chr14:81462600-81463000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr14:81462600-81463000	Bivalent/Poised TSS	NHDF-Ad	bronchial
9	chr14:81462600-81463200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr14:81462600-81463200	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr14:81462600-81463200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr14:81462600-81463200	Flanking Active TSS	Liver	Liver
13	chr14:81462600-81463200	Enhancers	Colon Smooth Muscle	Colon
14	chr14:81462600-81463200	Active TSS	Skeletal Muscle Female	skeletal muscle
15	chr14:81462600-81463200	Enhancers	K562	blood
16	chr14:81462600-81463400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
17	chr14:81462800-81463000	Flanking Active TSS	Adipose Nuclei	Adipose
18	chr14:81462800-81463000	Active TSS	Brain Anterior Caudate	brain
19	chr14:81462800-81463000	Active TSS	Brain Inferior Temporal Lobe	brain
20	chr14:81462800-81463000	Active TSS	Psoas Muscle	Psoas
21	chr14:81462800-81463000	Active TSS	Hela-S3	cervix
22	chr14:81462800-81463200	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr14:81462800-81463200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
24	chr14:81462800-81463200	Enhancers	Primary T cells from cord blood	blood
25	chr14:81462800-81463200	Enhancers	Primary T cells fromperipheralblood	blood
26	chr14:81462800-81463200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr14:81462800-81463200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr14:81462800-81463200	Flanking Active TSS	Brain Cingulate Gyrus	brain
29	chr14:81462800-81463200	Active TSS	Brain Substantia Nigra	brain
30	chr14:81462800-81463200	Enhancers	Rectal Smooth Muscle	rectum
31	chr14:81462800-81463200	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr14:81462800-81463200	Active TSS	Stomach Smooth Muscle	stomach
33	chr14:81462800-81463200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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