Variant report

Variant	rs917985
Chromosome Location	chr14:81470299-81470300
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs11159481	0.86[AMR][1000 genomes]
rs11845052	0.92[ASN][1000 genomes]
rs11850464	0.90[ASN][1000 genomes]
rs12050078	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs12050151	0.81[JPT][hapmap]
rs12050350	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs12050416	0.80[JPT][hapmap]
rs12437005	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12896769	0.95[ASN][1000 genomes]
rs17111237	0.81[JPT][hapmap]
rs17111246	0.81[JPT][hapmap]
rs17544968	0.92[ASN][1000 genomes]
rs17545038	0.92[ASN][1000 genomes]
rs17545310	0.97[ASN][1000 genomes]
rs179243	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs179249	0.87[ASN][1000 genomes]
rs179251	0.87[ASN][1000 genomes]
rs179254	0.81[ASN][1000 genomes]
rs179257	0.89[ASN][1000 genomes]
rs1990597	0.93[ASN][1000 genomes]
rs2024427	0.81[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs2110696	0.84[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs2268457	0.93[ASN][1000 genomes]
rs2268458	0.81[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2268460	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2284718	0.88[ASN][1000 genomes]
rs2284719	0.88[ASN][1000 genomes]
rs2284720	0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2284722	0.82[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs2284727	0.91[ASN][1000 genomes]
rs2300521	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2556607	0.80[JPT][hapmap]
rs28850656	0.80[JPT][hapmap]
rs35472552	0.84[ASN][1000 genomes]
rs3783945	0.89[ASN][1000 genomes]
rs3783951	0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs4903957	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs4903958	0.82[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs4903959	0.85[ASN][1000 genomes]
rs5002906	0.83[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs55945219	0.92[ASN][1000 genomes]
rs59431750	0.91[ASN][1000 genomes]
rs59711583	0.90[ASN][1000 genomes]
rs6574609	0.80[JPT][hapmap]
rs724169	0.92[ASN][1000 genomes]
rs726020	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs72689904	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72693057	0.88[ASN][1000 genomes]
rs72693068	0.86[ASN][1000 genomes]
rs72693069	0.86[ASN][1000 genomes]
rs72693070	0.86[ASN][1000 genomes]
rs72693072	0.86[ASN][1000 genomes]
rs72693073	0.86[ASN][1000 genomes]
rs72693075	0.90[ASN][1000 genomes]
rs72693078	0.91[ASN][1000 genomes]
rs72693080	0.91[ASN][1000 genomes]
rs72693090	0.92[ASN][1000 genomes]
rs72693093	0.91[ASN][1000 genomes]
rs72693096	0.92[ASN][1000 genomes]
rs72695026	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs74064796	0.90[ASN][1000 genomes]
rs768359	0.80[JPT][hapmap]
rs929630	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv983844	chr14:81467606-81470682	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
3	nsv1052999	chr14:81468860-81599074	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv542144	chr14:81468860-81599074	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81455800-81492200	Weak transcription	Fetal Thymus	thymus
2	chr14:81467000-81470400	Strong transcription	Dnd41	blood
3	chr14:81468000-81486600	Weak transcription	Thymus	Thymus
4	chr14:81468400-81472600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr14:81469400-81470800	Weak transcription	K562	blood

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