Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81447196..81448849-chr14:81635444..81638287,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NRXN3-4	chr14:81448332-81449982	NONHSAT038046

Variant related genes	Relation type
ENSG00000258999	Chromatin interaction

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10149689	0.94[CHD][hapmap]
rs1016699	0.80[JPT][hapmap]
rs11627934	0.80[JPT][hapmap]
rs12050077	0.94[CHD][hapmap]
rs12050078	0.88[CHB][hapmap];0.97[CHD][hapmap]
rs12050350	0.87[CHB][hapmap]
rs12050416	0.80[JPT][hapmap]
rs12433134	0.80[JPT][hapmap]
rs12434318	0.80[JPT][hapmap]
rs179243	0.88[CHB][hapmap];0.90[CHD][hapmap]
rs2024427	0.94[CHB][hapmap];0.93[JPT][hapmap]
rs2110696	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs2195103	0.94[CHD][hapmap]
rs2217177	0.93[CHD][hapmap]
rs2268458	0.88[CHB][hapmap];0.87[JPT][hapmap]
rs2268460	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs228119	0.80[JPT][hapmap]
rs2284720	0.94[CHB][hapmap];0.96[CHD][hapmap];0.87[JPT][hapmap]
rs2284722	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs2556607	0.80[JPT][hapmap]
rs28850656	0.80[JPT][hapmap]
rs3783951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4899780	0.80[JPT][hapmap]
rs4903958	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5002906	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs6574609	0.80[JPT][hapmap]
rs7140452	0.80[JPT][hapmap]
rs726020	0.88[CHB][hapmap]
rs759919	0.80[JPT][hapmap]
rs768359	0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2761847	chr14:81392124-81453137	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4903957	C14orf145	cis	parietal	SCAN
rs4903957	IZUMO1	trans	parietal	SCAN
rs4903957	C14orf145	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81447000-81451000	Genic enhancers	Dnd41	blood
2	chr14:81447600-81448600	Enhancers	Thymus	Thymus
3	chr14:81447800-81448600	Enhancers	Psoas Muscle	Psoas
4	chr14:81447800-81449200	Enhancers	Placenta	Placenta
5	chr14:81448000-81453400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr14:81448000-81453400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr14:81448200-81448600	Genic enhancers	Fetal Thymus	thymus

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