Variant report

Variant	rs4903959
Chromosome Location	chr14:81448620-81448621
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81447196..81448849-chr14:81635444..81638287,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NRXN3-4	chr14:81448332-81449982	NONHSAT038046

Variant related genes	Relation type
ENSG00000258999	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11845052	0.93[ASN][1000 genomes]
rs11850464	0.93[ASN][1000 genomes]
rs12437005	0.87[ASN][1000 genomes]
rs12896769	0.88[ASN][1000 genomes]
rs17544968	0.93[ASN][1000 genomes]
rs17545038	0.93[ASN][1000 genomes]
rs17545310	0.86[ASN][1000 genomes]
rs179249	0.90[ASN][1000 genomes]
rs179251	0.90[ASN][1000 genomes]
rs179254	0.84[ASN][1000 genomes]
rs179257	0.92[ASN][1000 genomes]
rs1990597	0.92[ASN][1000 genomes]
rs2024427	0.94[ASN][1000 genomes]
rs2110696	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2268457	0.92[ASN][1000 genomes]
rs2268458	0.92[ASN][1000 genomes]
rs2268460	0.87[ASN][1000 genomes]
rs2284718	0.91[ASN][1000 genomes]
rs2284719	0.91[ASN][1000 genomes]
rs2284720	0.94[ASN][1000 genomes]
rs2284722	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2284727	0.94[ASN][1000 genomes]
rs3783945	0.96[ASN][1000 genomes]
rs3783951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4903958	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5002906	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55945219	0.93[ASN][1000 genomes]
rs59431750	0.94[ASN][1000 genomes]
rs59711583	0.95[ASN][1000 genomes]
rs724169	0.93[ASN][1000 genomes]
rs72693057	0.91[ASN][1000 genomes]
rs72693068	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72693069	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72693070	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72693072	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72693073	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72693075	0.95[ASN][1000 genomes]
rs72693078	0.94[ASN][1000 genomes]
rs72693080	0.94[ASN][1000 genomes]
rs72693090	0.93[ASN][1000 genomes]
rs72693093	0.92[ASN][1000 genomes]
rs72693096	0.93[ASN][1000 genomes]
rs74064796	0.95[ASN][1000 genomes]
rs917985	0.85[ASN][1000 genomes]
rs929630	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2761847	chr14:81392124-81453137	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81447000-81451000	Genic enhancers	Dnd41	blood
2	chr14:81447800-81449200	Enhancers	Placenta	Placenta
3	chr14:81448000-81453400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr14:81448000-81453400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr14:81448600-81449200	Genic enhancers	Thymus	Thymus
6	chr14:81448600-81449400	Enhancers	Fetal Thymus	thymus

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