Variant report

Variant	rs929630
Chromosome Location	chr14:81467458-81467459
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11845052	0.91[ASN][1000 genomes]
rs11850464	0.89[ASN][1000 genomes]
rs12437005	0.97[ASN][1000 genomes]
rs12896769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17544968	0.91[ASN][1000 genomes]
rs17545038	0.91[ASN][1000 genomes]
rs17545310	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs179249	0.86[ASN][1000 genomes]
rs179251	0.86[ASN][1000 genomes]
rs179254	0.81[ASN][1000 genomes]
rs179257	0.88[ASN][1000 genomes]
rs1990597	0.92[ASN][1000 genomes]
rs2024427	0.90[ASN][1000 genomes]
rs2110696	0.89[ASN][1000 genomes]
rs2268457	0.92[ASN][1000 genomes]
rs2268458	0.92[ASN][1000 genomes]
rs2268460	0.97[ASN][1000 genomes]
rs2284718	0.87[ASN][1000 genomes]
rs2284719	0.87[ASN][1000 genomes]
rs2284720	0.90[ASN][1000 genomes]
rs2284722	0.89[ASN][1000 genomes]
rs2284727	0.90[ASN][1000 genomes]
rs2300521	0.82[ASN][1000 genomes]
rs35472552	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3783945	0.88[ASN][1000 genomes]
rs3783951	0.88[ASN][1000 genomes]
rs4903958	0.88[ASN][1000 genomes]
rs4903959	0.88[ASN][1000 genomes]
rs5002906	0.89[ASN][1000 genomes]
rs55945219	0.91[ASN][1000 genomes]
rs59431750	0.90[ASN][1000 genomes]
rs59711583	0.89[ASN][1000 genomes]
rs724169	0.91[ASN][1000 genomes]
rs72689904	0.82[ASN][1000 genomes]
rs72693057	0.87[ASN][1000 genomes]
rs72693068	0.89[ASN][1000 genomes]
rs72693069	0.89[ASN][1000 genomes]
rs72693070	0.89[ASN][1000 genomes]
rs72693072	0.89[ASN][1000 genomes]
rs72693073	0.89[ASN][1000 genomes]
rs72693075	0.89[ASN][1000 genomes]
rs72693078	0.90[ASN][1000 genomes]
rs72693080	0.90[ASN][1000 genomes]
rs72693090	0.91[ASN][1000 genomes]
rs72693093	0.90[ASN][1000 genomes]
rs72693096	0.91[ASN][1000 genomes]
rs74064796	0.89[ASN][1000 genomes]
rs917985	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81455800-81492200	Weak transcription	Fetal Thymus	thymus
2	chr14:81463200-81469000	Weak transcription	K562	blood
3	chr14:81466800-81468000	Strong transcription	Thymus	Thymus
4	chr14:81467000-81470400	Strong transcription	Dnd41	blood
5	chr14:81467200-81468400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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