Variant report

Variant	rs17545038
Chromosome Location	chr14:81457572-81457573
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81456409..81459092-chr14:81684225..81686871,2	MCF-7	breast:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10149689	0.90[CHD][hapmap]
rs1016699	0.80[JPT][hapmap]
rs11627934	0.80[JPT][hapmap]
rs11845052	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11850464	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12050077	0.90[CHD][hapmap]
rs12050078	0.95[CEU][hapmap];0.81[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.88[JPT][hapmap];0.94[MEX][hapmap];0.86[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12050151	0.81[JPT][hapmap]
rs12050350	0.94[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12050416	0.80[JPT][hapmap]
rs12433134	0.80[JPT][hapmap]
rs12434318	0.80[JPT][hapmap]
rs12437005	0.94[ASN][1000 genomes]
rs12896436	0.81[JPT][hapmap]
rs12896769	0.91[ASN][1000 genomes]
rs17111237	0.81[JPT][hapmap]
rs17111246	0.81[JPT][hapmap]
rs17111256	0.81[JPT][hapmap]
rs17544968	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17545310	0.89[ASN][1000 genomes]
rs179243	0.81[CHB][hapmap];0.93[CHD][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs179245	0.81[ASN][1000 genomes]
rs179249	0.93[ASN][1000 genomes]
rs179251	0.93[ASN][1000 genomes]
rs179254	0.87[ASN][1000 genomes]
rs179257	0.95[ASN][1000 genomes]
rs1990597	0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2024427	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2059719	0.81[JPT][hapmap]
rs2110696	0.87[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs2162547	0.81[JPT][hapmap]
rs2195103	0.90[CHD][hapmap]
rs2217177	0.90[CHD][hapmap]
rs2239610	0.95[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2268452	0.95[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2268457	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2268458	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2268460	0.85[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs228119	0.80[JPT][hapmap]
rs2284718	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2284719	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2284720	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2284722	0.94[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs2284727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2556607	0.80[JPT][hapmap]
rs28850656	0.80[JPT][hapmap]
rs3783945	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3783951	0.94[CHB][hapmap];0.87[JPT][hapmap];0.93[ASN][1000 genomes]
rs4899780	0.80[JPT][hapmap]
rs4903957	0.94[CHB][hapmap];0.97[CHD][hapmap];0.87[JPT][hapmap]
rs4903958	0.94[CHB][hapmap];0.97[CHD][hapmap];0.87[JPT][hapmap];0.93[ASN][1000 genomes]
rs4903959	0.93[ASN][1000 genomes]
rs5002906	0.93[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs55751898	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55945219	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59431750	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59711583	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6574609	0.80[JPT][hapmap]
rs7140452	0.80[JPT][hapmap]
rs724169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs726018	0.80[ASN][1000 genomes]
rs726020	0.81[CHB][hapmap];0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs72693057	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72693068	0.94[ASN][1000 genomes]
rs72693069	0.94[ASN][1000 genomes]
rs72693070	0.94[ASN][1000 genomes]
rs72693072	0.94[ASN][1000 genomes]
rs72693073	0.94[ASN][1000 genomes]
rs72693075	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72693078	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72693080	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72693090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72693093	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72693096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72695026	0.82[ASN][1000 genomes]
rs74064796	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs759919	0.80[JPT][hapmap]
rs768359	0.80[JPT][hapmap]
rs917985	0.92[ASN][1000 genomes]
rs929630	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81455400-81463800	Weak transcription	Thymus	Thymus
2	chr14:81455800-81492200	Weak transcription	Fetal Thymus	thymus
3	chr14:81456200-81459400	Weak transcription	Dnd41	blood

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