Variant report

Variant	rs68145550
Chromosome Location	chr14:81267971-81267972
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10498551	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10498552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12587646	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12590477	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12882027	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12892368	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17111078	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17111093	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2371414	0.80[AMR][1000 genomes]
rs2840052	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34052204	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35112141	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35749780	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35842427	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61979421	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61979422	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61979424	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs67330037	0.96[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs71416850	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81192800-81305400	Weak transcription	Primary B cells from cord blood	blood
2	chr14:81246800-81271600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr14:81250200-81268400	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr14:81251800-81282600	Weak transcription	A549	lung
5	chr14:81252200-81268200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr14:81256400-81271000	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr14:81259400-81274000	Weak transcription	Aorta	Aorta
8	chr14:81259400-81274000	Weak transcription	Pancreas	Pancrea
9	chr14:81259400-81274200	Weak transcription	Thymus	Thymus
10	chr14:81259400-81278400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr14:81264800-81269400	Weak transcription	Fetal Lung	lung
12	chr14:81265600-81268000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr14:81265600-81277200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr14:81265600-81284400	Weak transcription	Fetal Thymus	thymus
15	chr14:81265800-81274600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr14:81266800-81268400	Weak transcription	Primary T cells from cord blood	blood
17	chr14:81267400-81269000	Weak transcription	Dnd41	blood
18	chr14:81267400-81273800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr14:81267400-81284200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr14:81267400-81284800	Weak transcription	HSMM	muscle

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