Variant report

Variant	nsv974468
Chromosome Location	chr14:66027622-66038354
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:66034507..66036127-chr14:66047360..66049371,2	MCF-7	breast:
2	chr14:66033929..66036074-chr14:66039041..66041342,2	MCF-7	breast:
3	chr14:65878171..65880345-chr14:66037804..66039822,2	MCF-7	breast:
4	chr14:66028536..66030674-chr14:66033241..66035745,2	K562	blood:
5	chr14:66032707..66034682-chr14:66036601..66038473,2	MCF-7	breast:
6	chr14:66021842..66025531-chr14:66028043..66031703,3	MCF-7	breast:
7	chr14:66028536..66030674-chr14:66033241..66035745,2	K562	blood:
8	chr14:66025175..66028940-chr14:66031643..66034367,3	MCF-7	breast:
9	chr14:66025175..66028940-chr14:66031643..66034367,3	MCF-7	breast:
10	chr14:66032707..66034682-chr14:66036601..66038473,2	MCF-7	breast:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CHURC1-FNTB-4	chr14:66034824-66035024	ucscGeneNc_uc001xiv_2
2	lnc-CHURC1-FNTB-4	chr14:66034580-66034638	ucscGeneNc_uc001xiv_2
3	lnc-CHURC1-FNTB-4	chr14:66033298-66033338	ucscGeneNc_uc001xiv_2
4	lnc-CHURC1-FNTB-4	chr14:66028078-66028156	ucscGeneNc_uc001xiv_2
5	lnc-CHURC1-FNTB-4	chr14:66028524-66028665	ucscGeneNc_uc001xiv_2

No data

Variant related genes	Relation type
ENSG00000033170	chromatin interactions

Extended variants
information (count: 372 )
Associated
traits (count: 62 )

Variant overlapped rSNPs/rCNVs (count:372 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs547546487	chr14:66027633-66027634	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs371768307	chr14:66027644-66027645	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs527683258	chr14:66027742-66027743	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs150764845	chr14:66027756-66027757	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs535999807	chr14:66027764-66027765	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs113294617	chr14:66027782-66027783	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs183504221	chr14:66027813-66027814	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs137991681	chr14:66027826-66027827	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs189401360	chr14:66027834-66027835	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs371727584	chr14:66027893-66027894	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs571921652	chr14:66027897-66027898	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs572835380	chr14:66027982-66027983	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs28637004	chr14:66028064-66028065	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs45549535	chr14:66028065-66028066	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs112560804	chr14:66028148-66028149	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
16	rs574577192	chr14:66028202-66028203	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs142688407	chr14:66028302-66028303	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs368218345	chr14:66028304-66028305	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs201854627	chr14:66028308-66028309	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs371895527	chr14:66028320-66028321	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs374417891	chr14:66028338-66028339	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs368586417	chr14:66028412-66028413	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs2229677	chr14:66028446-66028447	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs368200233	chr14:66028466-66028467	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs372888976	chr14:66028473-66028474	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs181724726	chr14:66028478-66028479	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs369228866	chr14:66028483-66028484	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs3825639	chr14:66028505-66028506	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
29	rs376869469	chr14:66028515-66028516	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs76693442	chr14:66028525-66028526	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
31	rs527639924	chr14:66028528-66028529	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
32	rs547878285	chr14:66028566-66028567	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
33	rs567469316	chr14:66028583-66028584	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
34	rs184359007	chr14:66028622-66028623	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
35	rs541543742	chr14:66028630-66028631	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
36	rs570262581	chr14:66028660-66028661	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
37	rs569480603	chr14:66028661-66028662	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
38	rs140336351	chr14:66028692-66028693	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs377317630	chr14:66028746-66028747	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs376847155	chr14:66028753-66028754	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs544460532	chr14:66028800-66028801	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs12433597	chr14:66028847-66028848	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs114104439	chr14:66028868-66028869	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs144404676	chr14:66028918-66028919	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs534610521	chr14:66028931-66028932	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs3783710	chr14:66028968-66028969	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs556808255	chr14:66029011-66029012	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs576682136	chr14:66029060-66029061	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs554645411	chr14:66029066-66029067	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs545687476	chr14:66029077-66029078	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:62)

Disease	PMID	Source
Esophageal cancer	21851588	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
High-proliferative meningiomas	17937814	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Non-small cell lung cancer	21044232	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Medulloblastoma	21979893	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Hepatocellular carcinoma	22174799	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	17899364	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Renal cell carcinoma	21668985	CNVD
Chronic myeloid leukemia	20724749	CNVD
Wilms tumour	21544195	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Urothelial carcinoma	21177765	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Colorectal cancer	16272173	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Breast cancer	22032731	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Colorectal cancer	16774939	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Ovarian cancer	21720365	CNVD
Breast cancer	17603634	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Neuroblastoma	18923191	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Barrett''s syndrome	19417022	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	21364760	CNVD
Breast cancer	17133270	CNVD
Basal cell lymphoma	17053054	CNVD
Cancer	20164920	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:215 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65995200-66028000	Weak transcription	Dnd41	blood
2	chr14:65995400-66061000	Weak transcription	Gastric	stomach
3	chr14:66002400-66028000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr14:66003000-66028000	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr14:66003400-66028200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr14:66003800-66041200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr14:66005400-66028400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr14:66008600-66028000	Weak transcription	Primary B cells from cord blood	blood
9	chr14:66013200-66028200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr14:66015200-66033600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr14:66016000-66032800	Weak transcription	Small Intestine	intestine
12	chr14:66016000-66041400	Weak transcription	Ovary	ovary
13	chr14:66016600-66028000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr14:66016600-66033800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr14:66018200-66031600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr14:66018600-66027800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr14:66019400-66028200	Weak transcription	GM12878-XiMat	blood
18	chr14:66021400-66046400	Weak transcription	Thymus	Thymus
19	chr14:66021800-66043000	Weak transcription	Fetal Intestine Small	intestine
20	chr14:66022400-66028000	Weak transcription	Primary B cells from peripheral blood	blood
21	chr14:66022400-66028000	Weak transcription	Fetal Intestine Large	intestine
22	chr14:66022400-66033400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr14:66022400-66042200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr14:66022400-66047800	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr14:66022400-66052400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr14:66022800-66032800	Weak transcription	Adipose Nuclei	Adipose
27	chr14:66022800-66037000	Weak transcription	Stomach Mucosa	stomach
28	chr14:66023200-66028200	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr14:66023200-66029400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr14:66023200-66033000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr14:66023200-66037400	Weak transcription	Brain Hippocampus Middle	brain
32	chr14:66023200-66040200	Weak transcription	Lung	lung
33	chr14:66023200-66052000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr14:66023200-66054400	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr14:66023400-66028200	Weak transcription	Left Ventricle	heart
36	chr14:66023400-66032800	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr14:66023600-66031200	Weak transcription	Brain Cingulate Gyrus	brain
38	chr14:66023600-66038200	Weak transcription	Brain Substantia Nigra	brain
39	chr14:66023800-66028400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr14:66025000-66028000	Weak transcription	Fetal Thymus	thymus
41	chr14:66025400-66028000	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr14:66025400-66040400	Weak transcription	Fetal Lung	lung
43	chr14:66025600-66033000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr14:66026200-66028000	Weak transcription	Duodenum Mucosa	Duodenum
45	chr14:66026200-66040600	Weak transcription	Brain Angular Gyrus	brain
46	chr14:66026400-66028000	Enhancers	Pancreatic Islets	Pancreatic Islet
47	chr14:66026400-66028000	Weak transcription	NH-A	brain
48	chr14:66026400-66033600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr14:66026400-66036600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr14:66026600-66028000	Weak transcription	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links